View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9280_low_3 (Length: 706)
Name: NF9280_low_3
Description: NF9280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9280_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 132 - 565
Target Start/End: Complemental strand, 28629139 - 28628706
Alignment:
| Q |
132 |
gaagcaaaaagtcacatattaaaaccatatactctcgttaacaagtcttagtttaactcgtaaaaatatcaaaattattaggtcaaacatattgatcggg |
231 |
Q |
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| T |
28629139 |
gaagcaaaaagtcacatattaaaaccatatactctcgttaacaagtcttagtttaactcgtaaaaatatcaaaattattaggttaaacatattgatcggg |
28629040 |
T |
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| Q |
232 |
gttcaaactccaaatcatctactcatatgtataaatttgtaataaatattaatttcgtctatcaactaagaaatacaaacttttcacttttaaccnnnnn |
331 |
Q |
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| T |
28629039 |
gttcaaactccaaatcatctactcatatgtataaatttgtaataaattttaatttcgtctatcaactaaaaaatacaaacttttcacttttaaccaaaaa |
28628940 |
T |
|
| Q |
332 |
nnttagtcgggaagtcaagttaggagtcctttgtgtgtattttgatgtttaatcgcgagaagtgaggcatgttgatttttgttttgnnnnnnnnnnnnnt |
431 |
Q |
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| T |
28628939 |
aattggtcgggaagtcaaattaggagtcctttgtgtgtattttgatgtttaatcgcgagaagtgaggcatgttgagttttgttttgaaaaaaaaaaatat |
28628840 |
T |
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| Q |
432 |
atttcagaaagaaaatgaaaaatgaacacgatattgtactactatttaattccagttttgttttatatgatacatacattggcacacatgacttgatcag |
531 |
Q |
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| T |
28628839 |
atttcagaaagaaaatgaaaaatgaacacgatattgtactactatttaattccagttttgttttatatgatacatacattggcacacatgacttgatcag |
28628740 |
T |
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| Q |
532 |
atagttatttttgttgataatatcatgacctcag |
565 |
Q |
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| T |
28628739 |
atagttatttttgttgataatatcatgacctcag |
28628706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 593 - 688
Target Start/End: Complemental strand, 28628678 - 28628583
Alignment:
| Q |
593 |
caacataccatgacctcaaatagttgttgttgacaaactcttacatgcacatttttgtttacaatattatcttttcagactaactacaacacatat |
688 |
Q |
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| T |
28628678 |
caacataccatgacctcaaatagttgttgttgacaaacttttacatgcacatttttgtttacaatattatcttttcagactaactacaacatatat |
28628583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 28629254 - 28629180
Alignment:
| Q |
17 |
gacatcacataattaattttttaattttctgaaaaatttgtcaaatataggacctactctctttgtatatgttag |
91 |
Q |
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| T |
28629254 |
gacatcacataattaattttttaattttctgaaaaatttgtcaaatataggacttactctctttgtatatgttag |
28629180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 31926600 - 31926654
Alignment:
| Q |
172 |
acaagtcttagtttaactcgtaaaaatatcaaaattattaggtcaaacatattga |
226 |
Q |
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| T |
31926600 |
acaagtcttagttaaactagtaaaaataccaaaattattagaccaaacattttga |
31926654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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