View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9280_low_7 (Length: 306)
Name: NF9280_low_7
Description: NF9280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9280_low_7 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 28629538 - 28629245
Alignment:
| Q |
12 |
agcagagagtttactaataagcgaaaaaatagtcgcatgaggacgaaattcattctgatgggcatcagcaatcaaatccaaagccgcttgagaatcaaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28629538 |
agcagagagtttactaataagcgaaaaaatagtcgcatgaggacgaaattcattctgatgggcatcagcaatcaaatccaaagctgcttgagaatcaaat |
28629439 |
T |
|
| Q |
112 |
tccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagttcagcaaacaaattagacgctttaccacaggaac |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| |
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| T |
28629438 |
tccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcccgagagttcagtaaacaaattagacgctttaccataggaac |
28629339 |
T |
|
| Q |
212 |
cnnnnnnnccttgaatccaacccccataatgatttcttaaaaggccgccgaagcctgcattgtctgagaatgagttaaagaagatgacatcacat |
306 |
Q |
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| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28629338 |
caaaaaaaccttgaatccaa-ccccataatgatttcttaaaaggccgccgaagcctgcattgtctgagaatgagttaaagaagatgacatcacat |
28629245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 24796336 - 24796136
Alignment:
| Q |
12 |
agcagagagtttactaataagcgaaaaaatagtcgcatgaggacgaaattcattctgatgggcatca-----gcaatcaaatccaaagccgcttgagaat |
106 |
Q |
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|||| |||| || ||||| ||||||| |||||||||||||||| |||||||||| |||| | |||| | |||||||| |||| | |||||||| |
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| T |
24796336 |
agcatagagatttctaatgagcgaaagaatagtcgcatgaggatgaaattcattatgattgtcatctcatcggtaatcaaatttaaagtcacttgagaaa |
24796237 |
T |
|
| Q |
107 |
caaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagttcagcaaacaaattagacgctttaccaca |
206 |
Q |
| |
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|| |||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||| |||||| | ||||||||||||||| ||||||| |
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| T |
24796236 |
cagattccaaagtaatagatc----agcaaggtcccaaactagttgaagacctcgcaaaatttctgaaagttcaactaacaaattagacgctctaccaca |
24796141 |
T |
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| Q |
207 |
ggaac |
211 |
Q |
| |
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|||| |
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| T |
24796140 |
agaac |
24796136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 34536953 - 34536713
Alignment:
| Q |
12 |
agcagagagtttactaataagcgaaaaaatagtcgcatgaggacgaaattcattctgatgggcatcagcaatcaaatccaaagccgcttgagaatcaaat |
111 |
Q |
| |
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|||| ||||||| ||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||||| || |
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| T |
34536953 |
agcatagagttttctaatgagcgaaataatagtggcatgaggatgaaattcattctgatgggcatcaacaatcaaatctaaagccgcttgaaaatcagat |
34536854 |
T |
|
| Q |
112 |
tccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagttcagcaaacaaattagacgctttaccacaggaac |
211 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
34536853 |
tccaaagtaatggatcgataaccaaggtcccaagctagttgaagacctcgtaaaattcccgagagttcagcaaacaaattagacgctttaccacaataac |
34536754 |
T |
|
| Q |
212 |
cnnnnnnnccttgaatccaacccccataatgatttcttaaaa |
253 |
Q |
| |
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| ||||||||| ||||||| || ||||||||||||| |
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| T |
34536753 |
cagaaaaaccttgaatctaaccccc-tagtgatttcttaaaa |
34536713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 34196653 - 34196392
Alignment:
| Q |
12 |
agcagagagtttactaataagcgaaaaaatagtcgcatgaggacgaaattcattctgatgggcatcagcaatcaaatccaaagccgcttgagaatcaaat |
111 |
Q |
| |
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||||||||| || | ||||||| ||| ||||||| || ||||| |||||||||||||||| |||||| ||||||||||||||||||| ||||||||| || |
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| T |
34196653 |
agcagagagctttcgaataagcaaaagaatagtcacacgaggatgaaattcattctgatgagcatcaacaatcaaatccaaagccgcctgagaatcatat |
34196554 |
T |
|
| Q |
112 |
tccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagttcagcaaacaaattagacgctttaccacaggaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||| ||| |
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| T |
34196553 |
tccaaagtaatagatcgataaccaaggtcccaggctagttgaagacctcgcaaaattcccgagagttcaacaaataaattagacgctctaccacaaaaac |
34196454 |
T |
|
| Q |
212 |
cnnnnnnnccttgaatccaacccccataatgatttcttaaaaggccgccgaagcctgcattg |
273 |
Q |
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| ||||||||||||||| ||||| ||||||||| ||| |||| || || |||||| |
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| T |
34196453 |
cagaaaaatcttgaatccaacccctataataatttcttaagaggtcgcctaaaccagcattg |
34196392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 57 - 273
Target Start/End: Complemental strand, 48089247 - 48089031
Alignment:
| Q |
57 |
aaattcattctgatgggcatcagcaatcaaatccaaagccgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaaga |
156 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
48089247 |
aaattcattatgatgggcatcaaaaatcaaatccaacgccacttgagaatcaaatttcaaagtaatagatcgataaccaaggtcacaagctagttgaaga |
48089148 |
T |
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| Q |
157 |
cctcgcaaaattcctgagagttcagcaaacaaattagacgctttaccacaggaaccnnnnnnnccttgaatccaacccccataatgatttcttaaaaggc |
256 |
Q |
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||| |||||||||| |||||||||||||| | |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48089147 |
ccttgcaaaattcccgagagttcagcaaatagattagaagctttaccacatgaaccagaaaaaccttgaatccaacccccataatgatttcttaaaaggc |
48089048 |
T |
|
| Q |
257 |
cgccgaagcctgcattg |
273 |
Q |
| |
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| ||||| | ||||||| |
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| T |
48089047 |
caccgaaacttgcattg |
48089031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 26 - 255
Target Start/End: Original strand, 31836833 - 31837062
Alignment:
| Q |
26 |
taataagcgaaaaaatagtcgcatgaggacgaaattcattctgatgggcatcagcaatcaaatccaaagccgcttgagaatcaaattccaaagtaataga |
125 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||||||||| |||| |||| |||| ||| |||||| |||||||||||| ||| |||||||||||| |
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|
| T |
31836833 |
taataagcgaaagaatagtcgcatgaatatgaaattcattctcatggtcatcgtcaatagaattcaaagctgcttgagaatcagattacaaagtaataga |
31836932 |
T |
|
| Q |
126 |
tcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagttcagcaaacaaattagacgctttaccacaggaaccnnnnnnnccttga |
225 |
Q |
| |
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||||| |||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||| | |||| |||||| |
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| T |
31836933 |
tcgattaccaaggtcccaagctacttgaagacctcacaaaattctcgagagttcagcgaacaaattagacgctctaccactgaaaccagaaaaaccttga |
31837032 |
T |
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| Q |
226 |
atccaacccccataatgatttcttaaaagg |
255 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
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| T |
31837033 |
atccaaccctcataatgatttcttaaaagg |
31837062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 52715377 - 52715535
Alignment:
| Q |
12 |
agcagagagtttactaataagcgaaaaaatagtcgcatgaggacgaaattcattctgatgggcatcagcaatcaaatccaaagccgcttgagaatcaaat |
111 |
Q |
| |
|
|||| |||| || ||||| || |||| ||||||||||||| || ||||||||||| |||| || ||| ||| |||||| |||||||||||||||||| || |
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| T |
52715377 |
agcatagagctttctaatgagtgaaagaatagtcgcatgaagatgaaattcattcagatgagcttcaacaagcaaatctaaagccgcttgagaatcagat |
52715476 |
T |
|
| Q |
112 |
tccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcc |
170 |
Q |
| |
|
|||||| ||||| || ||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
52715477 |
tccaaaataatatattgataaccaaggtctcaagctagttgaagaccttgcaaaattcc |
52715535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 6076451 - 6076260
Alignment:
| Q |
16 |
gagagtttactaataagcgaaaaaatagtcgcatgaggacgaaattcattctgatgggcatcagcaatcaaatccaaagccgcttgagaatcaaattcca |
115 |
Q |
| |
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||||| || ||||| || |||| ||||||| |||||| | |||||||||| |||| ||| | |||||||||| |||||||||||| ||| | |||||| |
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| T |
6076451 |
gagagctttctaatgagtgaaagaatagtcacatgagaatgaaattcatttcaatggtcattaacaatcaaatctaaagccgcttgaaaattagattcca |
6076352 |
T |
|
| Q |
116 |
aagtaatagatcgataacc---aaggtcccaagttagttgaagacctcgcaaaattcctgagagttcagcaaacaaattagacgctttacca |
204 |
Q |
| |
|
|| |||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| |||| || ||||| |
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| T |
6076351 |
aaataatagatcgataacctaacaggtctaaagctagttgaagacctcgcaaaattctggagagttcaacaaacaaatcagacactctacca |
6076260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 55883223 - 55883374
Alignment:
| Q |
46 |
gcatgaggacgaaattcattctgatgggcatcagcaatcaaatccaaagccgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaag |
145 |
Q |
| |
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|||||| || |||||||||||||||| || ||||||||| ||||||||||||| ||||||| ||| |||| |||||||||||||| |||| ||||||| |
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| T |
55883223 |
gcatgatgatgaaattcattctgatgatcaatagcaatcaagtccaaagccgctttagaatcagatttcaaa-taatagatcgataatcaagatcccaag |
55883321 |
T |
|
| Q |
146 |
ttagttgaagacctcgcaaaattcctgagagttcagcaaacaaattagacgct |
198 |
Q |
| |
|
||| ||| || ||| |||| || ||||||||| ||||| |||| |||||| |
|
|
| T |
55883322 |
ttaattggaggtctcacaaatttgtcgagagttcaacaaaccaatttgacgct |
55883374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 5031027 - 5030971
Alignment:
| Q |
220 |
ccttgaatccaacccccataatgatttcttaaaaggccgccgaagcctgcattgtct |
276 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |
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| T |
5031027 |
ccttgaatccaacctccataatgatttcttaaaaggccgtcgagacctgcattgtct |
5030971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 5031552 - 5031461
Alignment:
| Q |
34 |
gaaaaaatagtcgcatgaggacgaaattcattctgatgggcatcagcaatcaaatccaaagccgcttgagaatcaaattccaaagtaataga |
125 |
Q |
| |
|
|||| |||||||| ||||||| |||| | ||| ||||| ||||| ||||||| | ||||||||||||||||||| ||| ||| ||||||| |
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| T |
5031552 |
gaaagaatagtcgaatgaggatgaaaataattgtgatgatcatcaacaatcaatttcaaagccgcttgagaatcatattttaaaataataga |
5031461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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