View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9280_low_8 (Length: 242)
Name: NF9280_low_8
Description: NF9280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9280_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 28629471 - 28629231
Alignment:
| Q |
1 |
gcaatcaaatccaaagccgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagtt |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28629471 |
gcaatcaaatccaaagctgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcccgagagtt |
28629372 |
T |
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| Q |
101 |
cagcaaacaaattagacgctttaccacaggaaccnnnnnnnccttgaatccaacccccataatgatttcttaaaaggccgccgaagcctgcattgtctga |
200 |
Q |
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||| |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28629371 |
cagtaaacaaattagacgctttaccataggaaccaaaaaaaccttgaatccaa-ccccataatgatttcttaaaaggccgccgaagcctgcattgtctga |
28629273 |
T |
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| Q |
201 |
gaatgagttaaagaagatgacatcacataattaattttttaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
28629272 |
gaatgagttaaagaagatgacatcacataattaattttttaa |
28629231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 24796262 - 24796136
Alignment:
| Q |
3 |
aatcaaatccaaagccgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagttca |
102 |
Q |
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|||||||| |||| | |||||||| || |||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||| |||||| |
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| T |
24796262 |
aatcaaatttaaagtcacttgagaaacagattccaaagtaatagatc----agcaaggtcccaaactagttgaagacctcgcaaaatttctgaaagttca |
24796167 |
T |
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| Q |
103 |
gcaaacaaattagacgctttaccacaggaac |
133 |
Q |
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| T |
24796166 |
actaacaaattagacgctctaccacaagaac |
24796136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 48089223 - 48089031
Alignment:
| Q |
3 |
aatcaaatccaaagccgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagttca |
102 |
Q |
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|||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| ||||||||| |
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| T |
48089223 |
aatcaaatccaacgccacttgagaatcaaatttcaaagtaatagatcgataaccaaggtcacaagctagttgaagaccttgcaaaattcccgagagttca |
48089124 |
T |
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| Q |
103 |
gcaaacaaattagacgctttaccacaggaaccnnnnnnnccttgaatccaacccccataatgatttcttaaaaggccgccgaagcctgcattg |
195 |
Q |
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| T |
48089123 |
gcaaatagattagaagctttaccacatgaaccagaaaaaccttgaatccaacccccataatgatttcttaaaaggccaccgaaacttgcattg |
48089031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 31836897 - 31837062
Alignment:
| Q |
12 |
caaagccgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagttcagcaaacaaa |
111 |
Q |
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|||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||||||| |||||| |
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| T |
31836897 |
caaagctgcttgagaatcagattacaaagtaatagatcgattaccaaggtcccaagctacttgaagacctcacaaaattctcgagagttcagcgaacaaa |
31836996 |
T |
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| Q |
112 |
ttagacgctttaccacaggaaccnnnnnnnccttgaatccaacccccataatgatttcttaaaagg |
177 |
Q |
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||||||||| |||||| | |||| ||||||||||||||| |||||||||||||||||||| |
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| T |
31836997 |
ttagacgctctaccactgaaaccagaaaaaccttgaatccaaccctcataatgatttcttaaaagg |
31837062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 52715449 - 52715535
Alignment:
| Q |
6 |
caaatccaaagccgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcc |
92 |
Q |
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|||||| |||||||||||||||||| |||||||| ||||| || ||||||||||||| |||| ||||||||||||| |||||||||| |
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| T |
52715449 |
caaatctaaagccgcttgagaatcagattccaaaataatatattgataaccaaggtctcaagctagttgaagaccttgcaaaattcc |
52715535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 6076387 - 6076260
Alignment:
| Q |
2 |
caatcaaatccaaagccgcttgagaatcaaattccaaagtaatagatcgataacc---aaggtcccaagttagttgaagacctcgcaaaattcctgagag |
98 |
Q |
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|||||||||| |||||||||||| ||| | |||||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||||| |
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| T |
6076387 |
caatcaaatctaaagccgcttgaaaattagattccaaaataatagatcgataacctaacaggtctaaagctagttgaagacctcgcaaaattctggagag |
6076288 |
T |
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| Q |
99 |
ttcagcaaacaaattagacgctttacca |
126 |
Q |
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|||| ||||||||| |||| || ||||| |
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| T |
6076287 |
ttcaacaaacaaatcagacactctacca |
6076260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 55883256 - 55883374
Alignment:
| Q |
1 |
gcaatcaaatccaaagccgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagtt |
100 |
Q |
| |
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|||||||| ||||||||||||| ||||||| ||| |||| |||||||||||||| |||| |||||||||| ||| || ||| |||| || ||||||| |
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| T |
55883256 |
gcaatcaagtccaaagccgctttagaatcagatttcaaa-taatagatcgataatcaagatcccaagttaattggaggtctcacaaatttgtcgagagtt |
55883354 |
T |
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| Q |
101 |
cagcaaacaaattagacgct |
120 |
Q |
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|| ||||| |||| |||||| |
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| T |
55883355 |
caacaaaccaatttgacgct |
55883374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 34536885 - 34536713
Alignment:
| Q |
2 |
caatcaaatccaaagccgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagttc |
101 |
Q |
| |
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|||||||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |
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| T |
34536885 |
caatcaaatctaaagccgcttgaaaatcagattccaaagtaatggatcgataaccaaggtcccaagctagttgaagacctcgtaaaattcccgagagttc |
34536786 |
T |
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| Q |
102 |
agcaaacaaattagacgctttaccacaggaaccnnnnnnnccttgaatccaacccccataatgatttcttaaaa |
175 |
Q |
| |
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||||||||||||||||||||||||||| |||| ||||||||| ||||||| || ||||||||||||| |
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| T |
34536785 |
agcaaacaaattagacgctttaccacaataaccagaaaaaccttgaatctaaccccc-tagtgatttcttaaaa |
34536713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 34196585 - 34196392
Alignment:
| Q |
2 |
caatcaaatccaaagccgcttgagaatcaaattccaaagtaatagatcgataaccaaggtcccaagttagttgaagacctcgcaaaattcctgagagttc |
101 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |
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| T |
34196585 |
caatcaaatccaaagccgcctgagaatcatattccaaagtaatagatcgataaccaaggtcccaggctagttgaagacctcgcaaaattcccgagagttc |
34196486 |
T |
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| Q |
102 |
agcaaacaaattagacgctttaccacaggaaccnnnnnnnccttgaatccaacccccataatgatttcttaaaaggccgccgaagcctgcattg |
195 |
Q |
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| |||| |||||||||||| ||||||| |||| ||||||||||||||| ||||| ||||||||| ||| |||| || || |||||| |
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| T |
34196485 |
aacaaataaattagacgctctaccacaaaaaccagaaaaatcttgaatccaacccctataataatttcttaagaggtcgcctaaaccagcattg |
34196392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 5031027 - 5030971
Alignment:
| Q |
142 |
ccttgaatccaacccccataatgatttcttaaaaggccgccgaagcctgcattgtct |
198 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |
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| T |
5031027 |
ccttgaatccaacctccataatgatttcttaaaaggccgtcgagacctgcattgtct |
5030971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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