View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9281_high_4 (Length: 470)
Name: NF9281_high_4
Description: NF9281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9281_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 27778271 - 27778718
Alignment:
| Q |
1 |
ccaatgcttctcatattctacctcattgctatgattatgctcattgtattgttgggttctttggtgatttttgtgtattcggttacacttagaggtcatg |
100 |
Q |
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| T |
27778271 |
ccaatgcttctcatattctaccttattgctatgattgtgctcattgtattgttgggttctttggtgatttttgtgtattcagttacacttagaggtcatg |
27778370 |
T |
|
| Q |
101 |
ggaatattgaacctaataggtcatatttagaatatcgtgtggatgatttttcattttggcttcgtagaagggttagaagttcacataaatgggatggaat |
200 |
Q |
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| T |
27778371 |
ggaatattgaacctaataggtcatatttagaatatcgagtggatgatttttcattttggcttcgtagaagggttagaagttcacataaatgggatggaat |
27778470 |
T |
|
| Q |
201 |
aaagagttgtcttagttcatcaaatatgtgtgctgagttgaatcaaagttatagaattgctcaagannnnnnnaatgctcacctatcacctttgcaggta |
300 |
Q |
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| T |
27778471 |
aaagagttgtcttagttcatcaaatatgtgtgctgagttgaatcaaagttatagaattgctcaagatttctttaatgctcacctatcacctttgcaggta |
27778570 |
T |
|
| Q |
301 |
a----atccactaatccattacttgatttgttttcacctaattaacctaattcaatccaatagtataacattcttgttggttcatgattacaattatgat |
396 |
Q |
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| T |
27778571 |
aatccatccactaatccattacttgatttgttttcacctaattaacctaattcaatccaatagtgtaacattcttgttggttcatgattacaattatgat |
27778670 |
T |
|
| Q |
397 |
tttgaatcagagtggtagttgctttgtgattacaattatgatttatta |
444 |
Q |
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| T |
27778671 |
tttgaatcagagtggtagttgctttgtgattacaattatgattaatta |
27778718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 12639452 - 12639591
Alignment:
| Q |
13 |
atattctacctcattgctatgattatgctcattgtattgttgggttctttggtgatttttgtgtattcggttacacttagaggtcatgggaatattgaac |
112 |
Q |
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||||||||||| |||||||| || |||| ||| | ||| | | || |||||| |||||||| || |||||| ||| | |||||||| | ||||||| |
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| T |
12639452 |
atattctacctagttgctatgcttgtgcttattatcttgctagtttgtttggttatttttgtttacatggttactcttcgtggtcatggtatgattgaac |
12639551 |
T |
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| Q |
113 |
ctaataggtcatatttagaatatcgtgtggatgatttttc |
152 |
Q |
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| T |
12639552 |
ctaatagggcttatttggaataccgtttggatgatttttc |
12639591 |
T |
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