View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9281_low_1 (Length: 942)
Name: NF9281_low_1
Description: NF9281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9281_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 778; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 26 - 928
Target Start/End: Complemental strand, 47579729 - 47578826
Alignment:
| Q |
26 |
aacaccaacaacaaaaatggagcatgnnnnnnnngtacacatgaacctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataat |
125 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47579729 |
aacaccaacaacaaaaatggagcatgaaaaaaaagtacacatgaacctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataat |
47579630 |
T |
|
| Q |
126 |
tggtatcatgtaagtgtatgaaccaacaactacacttggcaatcgggttccgaataaagattgaagaaacgtgcttagtccggaaacaaacaacgtactc |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
47579629 |
tggtatcatgtaagtgtatgaaccaacaactacacttggcaatcgggttccgaataaagattgaagaaacgtgctcagtccagaaacaaacaacgtactc |
47579530 |
T |
|
| Q |
226 |
tgaatcaccttggccttctccaactacgttgaaacaaagatttcagctaattgactaaattcatactgttgtaaaacatgaaattcatttaagaaggcaa |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
47579529 |
tgaatcaccttggccttctccaactacgttgaaacaaagatttcagctaattgactaaattcatactgttgtaaaacatgaaattcatttaagaaagcga |
47579430 |
T |
|
| Q |
326 |
aaatgtaacacnnnnnnnnnn-gtgtttacattgcttccacccatttgaggaacaactatagttggaatcaaaactgtcatgccaagagtcagaatgtaa |
424 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47579429 |
aaatgtaacaaaaaaaaaaaaagtgtttacattgcttccacccatttgaggaacaactatagttggaatcaaaactgtcatgccaagagtcaaaatgtaa |
47579330 |
T |
|
| Q |
425 |
tgctggaaccctaataaaagtgcttcagctgcattttagtaacaaaattaaattaaaaagcaagaaagtatatttgttgaaaatacatagagacttgatt |
524 |
Q |
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| T |
47579329 |
tgctggaaccctaataaaagtgcttcagctgcattttagtaacaaaattaaattaaaaagcaagaaagtatatttgttgaaaatacatagagacttgatt |
47579230 |
T |
|
| Q |
525 |
aatttgtttcatgaaaataatcttccaaaaacgaacaaaatgcttagtcattgaaatcatttcacatttgttggttgatataataagaatcattgttata |
624 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47579229 |
aatttgtttcatgagaataatcttccaaaaacgaacaaaatgcttattcattgaaatcatttcacatttgttggttgatataataagaatcattgttata |
47579130 |
T |
|
| Q |
625 |
ttatatatagtaagtattagtattaagtacgaataagagaatgaaaatactaacgccaaggtggaggactatttatgcaataatgaacaccaggtaattg |
724 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47579129 |
ttatatatagtaagtaatagtattaagtatgaataagagaatgaaaatactaacgccaaggtggaggactatttatgcaatattgaacaccaggtaattg |
47579030 |
T |
|
| Q |
725 |
ctctttagctgggtgtgctactggtagttgttcttgttttgcatctttggaccgtgatttcttgttgttgttgccgccatcaccgccacccccagcatta |
824 |
Q |
| |
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| T |
47579029 |
ctctttagctgggtgtgctactggtagttgttcttgttttgcatctttggactgtgattttttgttgttgttgccgccatcaccgccgccaccagcatta |
47578930 |
T |
|
| Q |
825 |
tttccatttccaccatctccaccttcattttgagccatatgttgcagataaacaaggaatgttatcaagtggaaactgctgtttagtttcttttgaaaaa |
924 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47578929 |
tttccatttccaccatctccaccttcattttgagccatatgttgcagataaacaaggaatgctatcaagtggaaactgctgtttagtttcttttgaaaaa |
47578830 |
T |
|
| Q |
925 |
actg |
928 |
Q |
| |
|
|||| |
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|
| T |
47578829 |
actg |
47578826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 8683382 - 8683237
Alignment:
| Q |
70 |
acctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataattggtatcatgtaagtgtatgaaccaacaactacacttggcaatc |
169 |
Q |
| |
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|||||||||||||||||||||| | | ||||||||||| |||||| || || || ||||| |||||| ||||||||||||||| |||| ||||||||| |
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| T |
8683382 |
acctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatc |
8683283 |
T |
|
| Q |
170 |
gggttccgaataaagattgaagaaacgtgcttagtccggaaacaaa |
215 |
Q |
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| |||||||| |||||||||| ||| ||||||||||| || ||||| |
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| T |
8683282 |
gagttccgaacaaagattgaaaaaatgtgcttagtccagacacaaa |
8683237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 8683104 - 8683036
Alignment:
| Q |
361 |
tccacccatttgaggaacaactatagttggaatcaaaactgtcatgccaagagtcagaatgtaatgctg |
429 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||| ||||||||| |
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| T |
8683104 |
tccacccatttgaggaacaattatagttggaatcagaactgtaatgccaagagttagaaggtaatgctg |
8683036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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