View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9281_low_12 (Length: 398)
Name: NF9281_low_12
Description: NF9281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9281_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 41544534 - 41544911
Alignment:
| Q |
1 |
tcatatatacaaaattgtacttttgaagacaaataatgttaatgtatgagttaacttttattagcatttgtggtgatggagttttttgggtatgtgaagg |
100 |
Q |
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| T |
41544534 |
tcatatatacaaaattgtacttttgaagacaaataatgttaatgtatgagttaacttttattagcatttgtggtgatggagttttttgggtatgtgaagg |
41544633 |
T |
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| Q |
101 |
tggtctttgatagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaattctcatttgtgcaaaaaagccagtcacatagaggaaa |
200 |
Q |
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| T |
41544634 |
tggtctttgatagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaattctcatttgtgcaaaaaagccagtcacatagaggaaa |
41544733 |
T |
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| Q |
201 |
aaccag-aaacttccactgcacaagaaactacagcccaagacaatgttgttggggataatgctatgttagagaataaagattcaattagtggaagtcttg |
299 |
Q |
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| T |
41544734 |
aaccagaaaacttccactgcacaagaaactatagcccaagacaatgttgttggggataatgctatgttagagaataaagattcaattagtggaagtcttg |
41544833 |
T |
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| Q |
300 |
attcagatgttatctttaatgtgaatgaattcttagactttcccactgaagaaccatatgtgtttgattgggtgaata |
377 |
Q |
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| T |
41544834 |
attcagatgttatctttaatgtgaatgaattcttagactttcccactgaagaaccatatgtgtttgattgggtgaata |
41544911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 52071583 - 52071522
Alignment:
| Q |
101 |
tggtctttgatagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaa |
162 |
Q |
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| T |
52071583 |
tggtctctaatagctggaagactaccagggcgaacagacaatgaaatcaagaattattggaa |
52071522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 7195678 - 7195740
Alignment:
| Q |
101 |
tggtctttgatagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaat |
163 |
Q |
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| T |
7195678 |
tggtctttgatagctaagagactaccaggacgaacagacaatgaaatcaagaactactggaat |
7195740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 9622075 - 9622127
Alignment:
| Q |
110 |
atagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaa |
162 |
Q |
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| T |
9622075 |
atagccggaagattaccaggacgaacagacaatgaaataaagaactactggaa |
9622127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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