View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9281_low_15 (Length: 379)
Name: NF9281_low_15
Description: NF9281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9281_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 39504161 - 39503798
Alignment:
| Q |
1 |
gtatttgatggagagaaggcttcttttcttgttagagagctcagaaagaattttgatactggcaaaacaaagagctatgaatggcggatttcccaattgg |
100 |
Q |
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| T |
39504161 |
gtatttgatggagagaaggcttatttgcttgttagagagctcaggaagaattttgatactggcaagacaaagagctacgaatggcggatttcccaattgg |
39504062 |
T |
|
| Q |
101 |
aggccatagtgaagatgttagaagagaaagagaaggaaattattgatgctcttcatacagacctttctaaacctagactagaagcatatataaccgaggt |
200 |
Q |
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| T |
39504061 |
aggccatagtgaagatgttagaagagaaagagaaggaaattattgatgctcttcatacagacctttctaaacctagactagaagcatatataaccgaggt |
39503962 |
T |
|
| Q |
201 |
ctacaatcaatttcctcttttgtttctattctttatttctctctaaattttagtctgcaaccgcaatgcgacaactgcaatacaacgttttttgagatct |
300 |
Q |
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| T |
39503961 |
cttcaatcaatttcctcttttgtttctattctttatttctctctaaattttagtctgcaaccgcaatgcgacaactgcaatacaacgttttttgagatct |
39503862 |
T |
|
| Q |
301 |
tcacaaccacaattgcggtcgcatcagccacaattgctcttattttaccgcaatataaagattc |
364 |
Q |
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| T |
39503861 |
tcacaaccacaattgcggtcgcatcagccacaattgctcttattttaccgcaatataaagattc |
39503798 |
T |
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