View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9281_low_17 (Length: 356)
Name: NF9281_low_17
Description: NF9281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9281_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 32346474 - 32346798
Alignment:
| Q |
16 |
cacgtacaacctatgaaaacatggtaataaatgtttctccacataactaatgtcattaaactactccacttgcaaagtaggttgaactataaatttaata |
115 |
Q |
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| T |
32346474 |
cacgtacaacctatgaaaacatggtaataaatgtttctccacataactaatgtcattaaactaccccacttgcaaagtagcttgaactataaacttaata |
32346573 |
T |
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| Q |
116 |
gttcgtgacattatttcctnnnnnnngttaaacttaaaggatgacatacataattttccataatata-cttaaaagtttacggtataattaagtgtcgaa |
214 |
Q |
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| T |
32346574 |
gttcgtgacattatttcctgaaaaa-gttaaacttaaaggatgacatacataattttccataatataacttaaaagtttacggtataattgagtgtcgaa |
32346672 |
T |
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| Q |
215 |
aataagtttgagagcttcgtcaatatacacctcacactttggtgcaagccattcaattctagcaagtatgaaaacaccatctcaatata-ttaattaaca |
313 |
Q |
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| T |
32346673 |
aataaatta-agagcttcgtcaatatacacctcacactttggtgcaagccattcaattctagcaagtatgaaaacaccatctcaatatatttaattaaca |
32346771 |
T |
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| Q |
314 |
acataatttctttacaccaccaaactt |
340 |
Q |
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| T |
32346772 |
acataatttctttacaccatcaaactt |
32346798 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 6992120 - 6992075
Alignment:
| Q |
235 |
caatatacacctcacactttggtgcaagccattcaattctagcaag |
280 |
Q |
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| T |
6992120 |
caatatgcacctcacacttttgtgcaagacattcaattcttgcaag |
6992075 |
T |
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