View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9281_low_22 (Length: 314)
Name: NF9281_low_22
Description: NF9281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9281_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 30789104 - 30789382
Alignment:
| Q |
19 |
ggactaacactgcaacataattgagatctagttacatttgaacaattgttaggtattactaaagagctttagtaacattttaccaaagagatgatacttt |
118 |
Q |
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| T |
30789104 |
ggactaacactgcaacataattgagatctagttacatttggacaattgttaggtattactaaagagctttagtaacattttaccaaagagatgatacttt |
30789203 |
T |
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| Q |
119 |
tattaagaatagattttaatccatccattcatttgacacattgtttaggcatgccatagtgaatgatcttgttacatttggtgctgctgtacacacttgt |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30789204 |
tattaagaaaagattttaatccatccattcatttgacacattgtttaggcatgccatagtgaatgatcttgttgcatttggtgctgctgtacacacttgt |
30789303 |
T |
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| Q |
219 |
tcaaggactgaatcagagctcaataagtgtttacaagaatggcaaagtaagggattttcggttactgggtcggtctgtg |
297 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30789304 |
tcaaggactgaatcagagctcagtaagtgtttacaagaatggcaaagtaagggattttcggttactgggtcggtctgtg |
30789382 |
T |
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