View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9281_low_3 (Length: 589)
Name: NF9281_low_3
Description: NF9281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9281_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-132; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 6070593 - 6070224
Alignment:
| Q |
1 |
ataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcgattgtatgttgatc |
100 |
Q |
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| T |
6070593 |
ataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcgattgtatgttgatc |
6070494 |
T |
|
| Q |
101 |
aatctaataaggtcattaagactccaacaattggttgattcatcaactaaatgttattcatctgagatttgagaataatgctagtggtgaaatttaaaga |
200 |
Q |
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| T |
6070493 |
aatctaataagctcattaagactccaacaattggttgattcatcaactaaatattgttcaaatgagatttcggtataatgctagtggtgaaatttaaaga |
6070394 |
T |
|
| Q |
201 |
ataaatggag----------nnnnnnnnnnaattagaataaacaagggggattaggaataaagctagca----tatgtaatttgaagaataaacaagggt |
286 |
Q |
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| T |
6070393 |
ataaatggagttttttttttttttttttttaattagaataaacaagggtggttaggaataaagctagcatatgtatgtaatttgaagaataaacaagggt |
6070294 |
T |
|
| Q |
287 |
gttattgtgacattttcgggttcatacatgtttaagcttatgatttgtgttatgcatattaatatttatc |
356 |
Q |
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| T |
6070293 |
gttgttgtgacattttcaggttcatacatgtttaagcttatgatttgtgttatgcatattaatatttatc |
6070224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 6055825 - 6056166
Alignment:
| Q |
1 |
ataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcgattgtatgttgatc |
100 |
Q |
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| T |
6055825 |
ataaaggaagagatgcatggagttgaaattcgagtggtgccacctggctattt--------caggtt-------caagagagttcgattgtatgttgatc |
6055909 |
T |
|
| Q |
101 |
aatctaataaggtcattaagactccaacaattggttgattcatcaactaaatgtta-ttcatctgagatttgagaataatgctagtggtgaaatttaaag |
199 |
Q |
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| T |
6055910 |
aatctaataagctcattaagactccaacaattggttgattcatcaactaaatatttgttcaaatgagatttgggtataatgctagtggtgaaatttaaag |
6056009 |
T |
|
| Q |
200 |
aataaatggagnnnnnnnnnn-----aattagaataaacaagggggattaggaataaagctagcatatgtaatttgaagaataaacaagggtgttattgt |
294 |
Q |
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| T |
6056010 |
aataaatggagtttttttttttttttaattagaataaacaaggggggttaggaataaagctagcatatgtaatttgaagaataaacaa--gagttgttgt |
6056107 |
T |
|
| Q |
295 |
gacattttcgggttcatacatgtttaagcttatgatttgtgttatgcatattaatattt |
353 |
Q |
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| T |
6056108 |
gacattttcgggttcatacatgtttaagcttatgatttgtgttatgcatattattattt |
6056166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 419 - 574
Target Start/End: Original strand, 6056230 - 6056386
Alignment:
| Q |
419 |
acttcaaaattaatttcac-tagacaatttcaaaacattttaaataatttatttttgtattgaccctttagtttttatgggaaaacggttctaataatct |
517 |
Q |
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| T |
6056230 |
acttcaaaattaatttgacgtagacaatttcaaaacattttaaataatttatttttgtatcgaccctttagtttttatggaaaaacggtcctaataatct |
6056329 |
T |
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| Q |
518 |
gatctttggtcggaagtaagggactctattaatctaaagttcgattcggaggtaagt |
574 |
Q |
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| T |
6056330 |
gatgtttggtcgtaaataagggactctgttcatctgaagttcgattcggaggtaagt |
6056386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 6067543 - 6067433
Alignment:
| Q |
221 |
aattagaataaacaagggggattaggaataaagctagcatatgtaatttgaagaataaacaagggtgttattgtgacattttcgggttca---tacatgt |
317 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |
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| T |
6067543 |
aattagaataaacaaggggggttgggaataaagctagcatatgtaatttgaagaataaacaagggtgttgttgtgacattttcggattcatactacatgt |
6067444 |
T |
|
| Q |
318 |
ttaagcttatg |
328 |
Q |
| |
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||||||||||| |
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| T |
6067443 |
ttaagcttatg |
6067433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6085669 - 6085465
Alignment:
| Q |
1 |
ataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcgattgtatgttgatc |
100 |
Q |
| |
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||||||||||| || |||||||||||||| ||||||||| |||| | |||||||||||||||| | | | ||||||||||||||||||||| |
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| T |
6085669 |
ataaaggaagatatatctggagttgaaattcaagtggtgccccctgattcatttgttactgctgatttcaggttcaagagagttcgattgtatgttgatg |
6085570 |
T |
|
| Q |
101 |
aatctaataaggtcattaagactccaacaattggttgattcatcaactaaatgttattcatctgagatttgagaataatgctagtggtgaaatttaaaga |
200 |
Q |
| |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||| || |||| | ||||||| | |||| ||||||| || ||||| |||| |
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| T |
6085569 |
aatctaataaggtcattaggactccaataattggttgattcatcaactaaatattgttcacataagatttgggtataaagctagtgatgtaatttgaaga |
6085470 |
T |
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| Q |
201 |
ataaa |
205 |
Q |
| |
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||||| |
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| T |
6085469 |
ataaa |
6085465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 6067608 - 6067566
Alignment:
| Q |
165 |
agatttgagaataatgctagtggtgaaatttaaagaataaatg |
207 |
Q |
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| T |
6067608 |
agatttgggaataatgctagtggtaatatttaaagaataaatg |
6067566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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