View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9281_low_31 (Length: 240)
Name: NF9281_low_31
Description: NF9281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9281_low_31 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 44949513 - 44949290
Alignment:
| Q |
17 |
agtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatgtttgg |
116 |
Q |
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| T |
44949513 |
agtgatgggaagcttgatacgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatgtttgg |
44949414 |
T |
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| Q |
117 |
agtggattaaaaagagcgaaatcttcaacactgaagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatcatgcagat |
216 |
Q |
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| T |
44949413 |
agtggattaaaaagagcgaaatcttcaacactgaagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatcatgcagat |
44949314 |
T |
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| Q |
217 |
gacaagtgctggatatggggattt |
240 |
Q |
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| T |
44949313 |
gacaagtgctggatatggggattt |
44949290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 44943723 - 44943533
Alignment:
| Q |
18 |
gtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatgtttgga |
117 |
Q |
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| T |
44943723 |
gtgatgggaaacttgatacggttttgatagatactctaaagaatgtgtacttgaaatgcattttcatgcagaaagtttccacatgtaatggatgtttgga |
44943624 |
T |
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| Q |
118 |
gtggattaaaaagagcgaaatcttcaacactgaagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatc |
208 |
Q |
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| T |
44943623 |
gtggattaaaaagagtggaatcttcaattctgaagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatc |
44943533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 6470363 - 6470139
Alignment:
| Q |
16 |
cagtgatgggaagcttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatgtttg |
115 |
Q |
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| T |
6470363 |
cagtgaagggagtcttgatacggtttttatagacgctctaaagcaaacgtgcctgcaatgcatttcattggagagagtttccacatgtgatggatgtttg |
6470264 |
T |
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| Q |
116 |
gagtggattaaaaagagcgaaatcttcaacactgaagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatcatgcaga |
215 |
Q |
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| T |
6470263 |
gagtgggttaaaaggagtggggtcttcacaactcaagtcacgggagaacaaatagaagagattttacaaactttggttttagatgatgagataatgcaga |
6470164 |
T |
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| Q |
216 |
tgacaagtgctggatatggggattt |
240 |
Q |
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| T |
6470163 |
tgacaagtactggatatggggattt |
6470139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 419334 - 419545
Alignment:
| Q |
29 |
cttgatatgggttttatagatgctctaaagaaggtgtgcttgaaatgcattttcatgcataaagtttccacatgtgatggatgtttggagtggattaaaa |
128 |
Q |
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| T |
419334 |
cttgatacggtttttatagatgctctaaagaaaacgtgcttgcaatgcatttcattacagagagtttccacatgtgatggatgtttggagtgggttaaaa |
419433 |
T |
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| Q |
129 |
agagcgaaatcttcaacactgaagtcacaggaaaacaaatagaggagattttgcaaactttggttttagatgatgagatcatgcagatgacaagtgctgg |
228 |
Q |
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| T |
419434 |
agagtggggtcttcacaactcaagtcacgggagaccaaatagaagagattttgcaaactttggttttagacgatgagatcatgcagatgacaagtactgg |
419533 |
T |
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| Q |
229 |
atatggggattt |
240 |
Q |
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| T |
419534 |
atatggggattt |
419545 |
T |
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