View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9281_low_7 (Length: 555)
Name: NF9281_low_7
Description: NF9281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9281_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 270 - 543
Target Start/End: Complemental strand, 12416314 - 12416037
Alignment:
| Q |
270 |
caagtgttgaaaacgtttactagtatattgttatcttgtactggtagaatggtgatcttgtttccgttttttcagtttgcttctgctttgttcaatttta |
369 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
12416314 |
caagagttgaaaacatttactagtatattgttatct-gtactggtagaatggtgatcttgtttccggtttt-cagtttgcttctgctttgttcaatttta |
12416217 |
T |
|
| Q |
370 |
gttgccatatgtactaatcctgtcttaatttcttgcaagcaaatccttcaga--nnnnnnnngcctaatgtgtcttaataacgcactagatcatgtcatg |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12416216 |
gttgccatatgtactaatcctgtcttaatttcttgcaagcaaatctttcagatttttgttttgcctaatgtgtcttaataacgcactagatcatgtcatg |
12416117 |
T |
|
| Q |
468 |
atata----tatggagtatttgtttgtgactcaccagcatgtcaaaatctgttttttgtttgtaaaacatctttgttgat |
543 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12416116 |
atatatatctatggagtatttgtttgtgactcaccagcatgtcaaaatctgttttttgtttgtaaaacatctttgttgat |
12416037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 270 - 543
Target Start/End: Complemental strand, 12428374 - 12428097
Alignment:
| Q |
270 |
caagtgttgaaaacgtttactagtatattgttatcttgtactggtagaatggtgatcttgtttccgttttttcagtttgcttctgctttgttcaatttta |
369 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
12428374 |
caagagttgaaaacatttactagtatattgttatct-gtactggtagaatggtgatcttgtttccggtttt-cagtttgcttctgctttgttcaatttta |
12428277 |
T |
|
| Q |
370 |
gttgccatatgtactaatcctgtcttaatttcttgcaagcaaatccttcaga--nnnnnnnngcctaatgtgtcttaataacgcactagatcatgtcatg |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12428276 |
gttgccatatgtactaatcctgtcttaatttcttgcaagcaaatctttcagatttttgttttgcctaatgtgtcttaataacgcactagatcatgtcatg |
12428177 |
T |
|
| Q |
468 |
atata----tatggagtatttgtttgtgactcaccagcatgtcaaaatctgttttttgtttgtaaaacatctttgttgat |
543 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12428176 |
atatatatctatggagtatttgtttgtgactcaccagcatgtcaaaatctgttttttgtttgtaaaacatctttgttgat |
12428097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 12416568 - 12416355
Alignment:
| Q |
12 |
gagatggacatcacatccaatagttcttatgattatggtttcaaatccgagaatgtttcaaatgctaaccctacaactgtacggcagttggtgaaatttc |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
12416568 |
gagatggacatagcatccaatagttcttattcttatgatttcaaatccgagaatgtttcaaatgcttaccctacaactgtacagcagttggtgaaatttc |
12416469 |
T |
|
| Q |
112 |
actattcagttatggcaaaaaaccaagtttctgaaagaattttacctacaattcctggaatatgaattgtctatgacttcacttttctgtgacctagttc |
211 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12416468 |
acttttcagctatggcaaaaaaccaagtttctgaaagaattttaactacaattcctggaatatgaattatctatgacttcacttttctgtgacctagttc |
12416369 |
T |
|
| Q |
212 |
cttgctgaagactt |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12416368 |
cttgctgaagactt |
12416355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 12428628 - 12428415
Alignment:
| Q |
12 |
gagatggacatcacatccaatagttcttatgattatggtttcaaatccgagaatgtttcaaatgctaaccctacaactgtacggcagttggtgaaatttc |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
12428628 |
gagatggacatagcatccaatagttcttattcttatgatttcaaatccgagaatgtttcaaatgcttaccctacaactgtacagcagttggtgaaatttc |
12428529 |
T |
|
| Q |
112 |
actattcagttatggcaaaaaaccaagtttctgaaagaattttacctacaattcctggaatatgaattgtctatgacttcacttttctgtgacctagttc |
211 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12428528 |
acttttcagctatggcaaaaaaccaagtttctgaaagaattttaactacaattcctggaatatgaattatctatgacttcacttttctgtgacctagttc |
12428429 |
T |
|
| Q |
212 |
cttgctgaagactt |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12428428 |
cttgctgaagactt |
12428415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 472 - 536
Target Start/End: Complemental strand, 12402298 - 12402229
Alignment:
| Q |
472 |
atatggagtatttgtttgtgactcaccag-----catgtcaaaatctgttttttgtttgtaaaacatctt |
536 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12402298 |
atatggagtatttgtttgtgactcaccagaccagcatgtcaaaatctgtttgttgtttgtaaaacatctt |
12402229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University