View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9281_low_9 (Length: 518)
Name: NF9281_low_9
Description: NF9281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9281_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 20 - 501
Target Start/End: Complemental strand, 8947162 - 8946681
Alignment:
| Q |
20 |
gaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaa |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8947162 |
gaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtttggcccgagagtgaaagttttaatgataatggaa |
8947063 |
T |
|
| Q |
120 |
tgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcattttgcaacaagaaactcattggagctagattctt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8947062 |
tgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaatagcaacaattcatcattttgcaacaagaaactcattggagcaagattctt |
8946963 |
T |
|
| Q |
220 |
caataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacgtgacacaaatggtcatggaacccacacttcaacaacagca |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946962 |
caataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacgtgacacaaatggtcatggaacccacacttcaacaacagca |
8946863 |
T |
|
| Q |
320 |
gccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaaggggaatagctacattgtctagagtgtctatgtacaagattgtgt |
419 |
Q |
| |
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| T |
8946862 |
gccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaaggggaatagctacattgtctagagtgtctatgtacaagattgtgt |
8946763 |
T |
|
| Q |
420 |
ggggacaaaatgaagatccgattgcaatttcatctgatataatggctgcaattgatgccgcaatatcggacggtgttgatgt |
501 |
Q |
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| T |
8946762 |
ggggacaaaatgaagatccaattgcaatttcatctgatataatggctgcaattgatgctgcaatatcggacggtgttgatgt |
8946681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 501
Target Start/End: Original strand, 8973334 - 8973808
Alignment:
| Q |
21 |
aaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaat |
120 |
Q |
| |
|
|||||||||||||||||||| | | ||| ||||||||||| ||||| ||||||| | ||||||||||| |||||||||||||| || ||||||| || |
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| T |
8973334 |
aaggggcatggccagcttctgattatggcaaagatgtcattgttggtatgattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacat |
8973433 |
T |
|
| Q |
121 |
gactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcattttgcaacaagaaactcattggagctagattcttc |
220 |
Q |
| |
|
| || |||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
8973434 |
gcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaataccaacaattcatctttttgcaacaagaaactcattggagctagattcttc |
8973533 |
T |
|
| Q |
221 |
aataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacgtgacacaaatggtcatggaacccacacttcaacaacagcag |
320 |
Q |
| |
|
|| |||||||| | || ||| || | || | | || ||||| ||||| | ||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
8973534 |
aacaaagggtttttggcaaaatatccaaatctaactaacacaattttgaactccacacgtgacacaaatggtcatgggacacacacttcaacaacagcag |
8973633 |
T |
|
| Q |
321 |
ccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaaggggaatagctacattgtctagagtgtctatgtacaagattgtgtg |
420 |
Q |
| |
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| || |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||| || ||| |
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| T |
8973634 |
ctgggaatcaagttgatggtgcatcattctttggttatgcaaacggaacagcaagaggaatagctacattgtctagagtagctatgtacaagactgcgtg |
8973733 |
T |
|
| Q |
421 |
gggacaaaatgaagatccgattgcaatttcatctgatataatggctgcaattgatgccgcaatatcggacggtgttgatgt |
501 |
Q |
| |
|
||| || ||| | | |||| | |||||||||||||| || ||| |||||||| |||||||||||||||||||||| |
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|
| T |
8973734 |
gggcaaagatggaca------tgcagtgtcatctgatataatagccgcagttgatgcctcaatatcggacggtgttgatgt |
8973808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 51 - 384
Target Start/End: Original strand, 8961962 - 8962295
Alignment:
| Q |
51 |
aagatgtcattattggtttgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaa |
150 |
Q |
| |
|
||||||||||| ||||| ||||||| | ||||||||||| |||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| |
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|
| T |
8961962 |
aagatgtcattgttggtgtgattgataccggtgtttggccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaa |
8962061 |
T |
|
| Q |
151 |
gttatgtcaatttgcaaataccaacaattcatcattttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaac |
250 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| | |||| ||||| | | |
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|
| T |
8962062 |
attatgtcaatttgaaaataccaacaattcatctttttgcaacaaaaaactcattggagcaagattcttcaacaaagggttcttggcgatgaattccacc |
8962161 |
T |
|
| Q |
251 |
attaatacaacaatagtgaacactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttct |
350 |
Q |
| |
|
||| ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| | ||| || ||||| ||| |||||||||| |||| |
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|
| T |
8962162 |
attgatacaacaacagtgaactctacacgtgacacagatggtcatggaacccacacttcaacaacggtagcggggaatcaggttaatggtgcatcattct |
8962261 |
T |
|
| Q |
351 |
ttggttatgcaaatggaacggcaaggggaatagc |
384 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||| |
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|
| T |
8962262 |
tcggttatgcaaatggaacagcaagaggaatagc |
8962295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 415
Target Start/End: Complemental strand, 9950244 - 9950079
Alignment:
| Q |
250 |
cattaatacaacaatagtgaacactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttc |
349 |
Q |
| |
|
||||||||||||||| ||||| |||||| || | ||| ||| | | | |||||||||||| |||| || | ||||||||||||||||||||| |||| |
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|
| T |
9950244 |
cattaatacaacaattgtgaatactacatgtcatacatatgattaagagacccacacttcattaacaacaacttgaaatcaagttgatggtgcatttttc |
9950145 |
T |
|
| Q |
350 |
tttggttatgcaaatggaacggcaaggggaatagctacattgtctagagtgtctatgtacaagatt |
415 |
Q |
| |
|
|||||||||| |||| |||| ||| | |||| ||||||||||||||| |||||||||||||| |
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|
| T |
9950144 |
tttggttatgtaaatcgaactacaaaagaaataattacattgtctagagtagctatgtacaagatt |
9950079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 501
Target Start/End: Original strand, 8962351 - 8962409
Alignment:
| Q |
443 |
gcaatttcatctgatataatggctgcaattgatgccgcaatatcggacggtgttgatgt |
501 |
Q |
| |
|
||| |||||||||| | ||| ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
8962351 |
gcactttcatctgacacaatagctgcaattgatgccgcaatatcagacggtgtggatgt |
8962409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 8957087 - 8957140
Alignment:
| Q |
175 |
caattcatcattttgcaacaagaaactcattggagctagattcttcaataaagg |
228 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || | ||||||||| ||||| |
|
|
| T |
8957087 |
caattcatctctttgcaacaagaaactcattggtgccaaattcttcaacaaagg |
8957140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 8957197 - 8957270
Alignment:
| Q |
288 |
atggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgca |
361 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| ||||| |||||||| ||| || || |||||||||||| |
|
|
| T |
8957197 |
atggtcatgggactcacacttcatcaacagcagctggaaacagagttgatgatgcttcattttttggttatgca |
8957270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 8957346 - 8957398
Alignment:
| Q |
449 |
tcatctgatataatggctgcaattgatgccgcaatatcggacggtgttgatgt |
501 |
Q |
| |
|
||||||||| |||| || |||||||| || |||||||| |||||||||||||| |
|
|
| T |
8957346 |
tcatctgatgtaatagccgcaattgacgcggcaatatcagacggtgttgatgt |
8957398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 22 - 498
Target Start/End: Complemental strand, 21688311 - 21687829
Alignment:
| Q |
22 |
aggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatg |
121 |
Q |
| |
|
||||||||||||| ||||| | |||||| ||||| ||||| ||||| | || ||| | ||||||||||| |||||||||||||||| ||| |||||||| |
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|
| T |
21688311 |
aggggcatggccaacttctgattttggtaaagatatcattgttggtgtaatagacactggtgtttggccagaaagtgaaagttttagagatgatggaatg |
21688212 |
T |
|
| Q |
122 |
actaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaaca------------attcatcattttgcaacaagaaactcattggag |
209 |
Q |
| |
|
|||||||| || |||||||||||||| | ||||||||||||| ||| |||||| ||| ||| || |||||||||||||||||||||| |
|
|
| T |
21688211 |
actaaaataccctcaaaatggaaaggccaattatgtcaatttgagaattccaacatccagtcaatcaatttatctttgtgcaacaagaaactcattggag |
21688112 |
T |
|
| Q |
210 |
ctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtgaacactacacgtgacacaaatggtcatggaacccacacttc |
309 |
Q |
| |
|
|||| |||||||| ||||| || | || ||| | || ||||||| ||||||||| ||||| | |||||||||||||| ||||| || || || ||||| |
|
|
| T |
21688111 |
ctaggttcttcaacaaaggcttcttggcaaaacactccaacattagtacaacaattttgaactccacacgtgacacaaacggtcacgggacacatacttc |
21688012 |
T |
|
| Q |
310 |
aacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaacggcaaggggaatagctacattgtctagagtgtctatgtac |
409 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||||| || |||||| ||| ||||||||| |||| ||| |
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|
| T |
21688011 |
aacaacagcagctggaagcaaagttgatggtgcatctttctttggctatgcaaatggaacagcaagaggtatagcttcatcgtctagagtagctatatac |
21687912 |
T |
|
| Q |
410 |
aagattgtgtggggacaaaatgaagatccgattgcaatttcatctgatataatggctgcaattgatgccgcaatatcggacggtgttga |
498 |
Q |
| |
|
|||| || ||||||| || ||| ||| ||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
21687911 |
aagactgcgtggggaaaagatggaga------cgcactttcatctgatataatagctgcaattgatgctgcaatatctgacggtgttga |
21687829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 34963857 - 34963779
Alignment:
| Q |
69 |
tgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
147 |
Q |
| |
|
|||||||| |||| |||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
34963857 |
tgattgacacaggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 34963754 - 34963707
Alignment:
| Q |
175 |
caattcatcattttgcaacaagaaactcattggagctagattcttcaa |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34963754 |
caattcatctctttgcaacaagaaactcattggagctaaattcttcaa |
34963707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 360
Target Start/End: Complemental strand, 34963657 - 34963572
Alignment:
| Q |
275 |
acacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgc |
360 |
Q |
| |
|
|||||||||||| | ||||||||||| || ||||||||||||||||| |||| |||||| |||||| |||||||||||||| |
|
|
| T |
34963657 |
acacgtgacacagaaggtcatggaactcatacttcaacaacagcagctggaagcagagttgaccatgcatcattctttggttatgc |
34963572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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