View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9282_high_1 (Length: 608)

Name: NF9282_high_1
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9282_high_1
NF9282_high_1
[»] chr8 (1 HSPs)
chr8 (1-192)||(4200728-4200919)
[»] chr5 (4 HSPs)
chr5 (233-405)||(3805539-3805706)
chr5 (411-542)||(3801207-3801338)
chr5 (18-160)||(1529583-1529725)
chr5 (233-285)||(4879328-4879380)
[»] chr3 (1 HSPs)
chr3 (395-527)||(7275634-7275766)
[»] chr7 (2 HSPs)
chr7 (233-381)||(17978582-17978724)
chr7 (233-301)||(17264875-17264943)
[»] chr4 (2 HSPs)
chr4 (18-82)||(29740898-29740962)
chr4 (233-296)||(22460431-22460494)
[»] chr2 (4 HSPs)
chr2 (233-381)||(29522465-29522607)
chr2 (234-301)||(36620156-36620223)
chr2 (413-475)||(36619942-36620004)
chr2 (442-475)||(29522311-29522344)
[»] chr6 (3 HSPs)
chr6 (233-302)||(6253774-6253843)
chr6 (233-287)||(10895560-10895614)
chr6 (247-292)||(26091863-26091907)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 4200919 - 4200728
Alignment:
Q  1 tcagcacaccagatttaaccagacaaaataaatgttgaagcaccaagacatgcaatttgaacccagacttatgagaagtatctatcaagacaaaaagtat 100  Q
    ||||| |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  |||| ||||||||||||  || |||    
T  4200919 tcagcgcaccggatttagccagacaaaataaatgttgaagtaccaagacatgcaatttgaacccagacttgtgcaaagtgtctatcaagacagcaaatat 4200820  T
Q  101 ctcctgttctattttcaaaaaatatgtcctataaaactgattgcagaacttcgaagcctgaaatttgttcagcatctccaacaacagtttca 192  Q
    ||| ||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4200819 ctcttgttctattgtcaaaatgtatgtcctataaaactgattgcagaacttcgaagcctgaaatttgttcagcatctccaacgacagtttca 4200728  T

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Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 233 - 405
Target Start/End: Complemental strand, 3805706 - 3805539
Alignment:
Q  233 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcactcacccacatccctcccactctcattgccgg 332  Q
    ||||||||||| || |||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||      
T  3805706 acccattaattctgggaaaataccataatattcctaagttatttttaatattactgccatgccactcactcacccaca----tcccactctcattgccaa 3805611  T
Q  333 ttttctccagaaccggaaagaaaagaacaagccatattttctcttctccccacccacaggaaaatcccacgac 405  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||||    
T  3805610 ttttctccagaacgggaaagaaaagaacaagccatattttcgcttctcgccacccacagg-caatcccacgac 3805539  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 411 - 542
Target Start/End: Complemental strand, 3801338 - 3801207
Alignment:
Q  411 aactctctgcatcaatctctgactttgaaatttcattggtctcaatctctctacaaaccctaaaataaatttgtaagtgtatcgtaatctgattcttcat 510  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||||    
T  3801338 aactctctgcatcaatctctgactttgatttttcattggtctcaatctctctacaaaccctaaaataaaattgtaagtgtattttaatttgattcttcat 3801239  T
Q  511 ttgttagtaagtaatgatagtgcttcaatgtc 542  Q
      ||||||||||||||||| || |||||||||    
T  3801238 gcgttagtaagtaatgatattgtttcaatgtc 3801207  T

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Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 1529725 - 1529583
Alignment:
Q  18 accagacaaaataaatgttgaagcaccaagacatgcaatttgaacccagacttatgagaagtatctatcaagacaaaaagtatctcctgttctattttca 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||  || |||||| || |||||| |||    
T  1529725 accagacataataaatgttgaagcaccaagacatgcaatttgaacccaggcttatgaaaagtgtctgtcaagacagcaaatatctcttgctctattgtca 1529626  T
Q  118 aaaaatatgtcctataaaactgattgcagaacttcgaagcctg 160  Q
    ||||||| |||| |||||||||||||||||||| |||||||||    
T  1529625 aaaaataagtccgataaaactgattgcagaactccgaagcctg 1529583  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 4879380 - 4879328
Alignment:
Q  233 acccattaattttgtgaaaataccataatacccctgagttatttttaatatta 285  Q
    ||||||| ||| ||||||||||||||| ||||| | ||||| |||||||||||    
T  4879380 acccatttattatgtgaaaataccatattacccttaagttaattttaatatta 4879328  T

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Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 395 - 527
Target Start/End: Original strand, 7275634 - 7275766
Alignment:
Q  395 aatcccacgacccgcgaactctctgcatcaatctctgactttgaaatttcattggtctcaatctctctacaaaccctaaaataaatttgtaagtgtatcg 494  Q
    |||||| ||||| | ||||||||||||||| | ||||||| |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  7275634 aatcccgcgaccggagaactctctgcatcagtttctgactctgatttttcattggtctcaatctctctacaaaccctaaaataaaattgtaagtgtatct 7275733  T
Q  495 taatctgattcttcatttgttagtaagtaatga 527  Q
    |||||||||||||||||||||||||||||||||    
T  7275734 taatctgattcttcatttgttagtaagtaatga 7275766  T

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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 233 - 381
Target Start/End: Complemental strand, 17978724 - 17978582
Alignment:
Q  233 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcactcacccacatccctcccactctcattgccgg 332  Q
    ||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||||||| ||||||||||||   | |||   |  ||||||||| ||| |       
T  17978724 acccatttattttgtgaaaatactataatgcccctgaattaattttaatattactaccatgccactca---aacca---ctatcccactctaattccaat 17978631  T
Q  333 ttttctccagaaccggaaagaaaagaacaagccatattttctcttctcc 381  Q
     |||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  17978630 atttctccagaacgggaaagaaatgaagaagccatattttctcttctcc 17978582  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 17264943 - 17264875
Alignment:
Q  233 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcac 301  Q
    ||||||| |||||||||||| || ||||||||| |||  || |||||||||||||  ||||||||||||    
T  17264943 acccatttattttgtgaaaagactataatacccttgaagtaattttaatattactatcatgccactcac 17264875  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 29740898 - 29740962
Alignment:
Q  18 accagacaaaataaatgttgaagcaccaagacatgcaatttgaacccagacttatgagaagtatc 82  Q
    ||||||||||| ||||| |||||||||| |||||| ||||||||||||| ||||||| |||||||    
T  29740898 accagacaaaacaaatgctgaagcaccaggacatgtaatttgaacccaggcttatgaaaagtatc 29740962  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 22460494 - 22460431
Alignment:
Q  233 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgcca 296  Q
    ||||||| |||||||||||| || ||||||||| ||||||| |||||||||||||| |||||||    
T  22460494 acccatttattttgtgaaaagactataatacccatgagttaattttaatattactgtcatgcca 22460431  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 233 - 381
Target Start/End: Complemental strand, 29522607 - 29522465
Alignment:
Q  233 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcactcacccacatccctcccactctcattgccgg 332  Q
    ||||||| ||||||||||||||| ||||| ||||||  ||| ||||||||||||| ||||||||||||   | |||   |  ||||||||| ||| |       
T  29522607 acccatttattttgtgaaaatactataatgcccctggattaattttaatattactaccatgccactca---aacca---ctatcccactctaattccaat 29522514  T
Q  333 ttttctccagaaccggaaagaaaagaacaagccatattttctcttctcc 381  Q
     |||||||||||| ||||||||| ||| |||| ||||||||||||||||    
T  29522513 atttctccagaacgggaaagaaacgaagaagcaatattttctcttctcc 29522465  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 36620223 - 36620156
Alignment:
Q  234 cccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcac 301  Q
    |||||||||||||||||| ||||||||||||| | || || ||| |||||||| || |||||| ||||    
T  36620223 cccattaattttgtgaaattaccataatacccttaagctaatttgaatattacagctatgccattcac 36620156  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 475
Target Start/End: Complemental strand, 36620004 - 36619942
Alignment:
Q  413 ctctctgcatcaatctctgactttgaaatttcattggtctcaatctctctacaaaccctaaaa 475  Q
    ||||||| |||  ||||||||| ||||  |||||| ||||||||||||| |||||||||||||    
T  36620004 ctctctgtatcgttctctgactctgaatcttcatttgtctcaatctctccacaaaccctaaaa 36619942  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 475
Target Start/End: Complemental strand, 29522344 - 29522311
Alignment:
Q  442 ttcattggtctcaatctctctacaaaccctaaaa 475  Q
    ||||||| ||||||||||||||||||||||||||    
T  29522344 ttcattgatctcaatctctctacaaaccctaaaa 29522311  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 6253774 - 6253843
Alignment:
Q  233 acccattaattttgtgaaaataccataatacccctgagttatttttaatattactgccatgccactcact 302  Q
    ||||||| ||| ||||||||||||||| | ||| ||||||| |||||||||||||  |||||||||||||    
T  6253774 acccatttattctgtgaaaataccatattgcccttgagttaattttaatattactatcatgccactcact 6253843  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 10895614 - 10895560
Alignment:
Q  233 acccattaattttgtgaaaataccataatacccctgagttatttttaatattact 287  Q
    ||||||| ||| |||||||| || |||||||||||||| || |||||||||||||    
T  10895614 acccatttattctgtgaaaagactataatacccctgaggtaattttaatattact 10895560  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 26091863 - 26091907
Alignment:
Q  247 tgaaaataccataatacccctgagttatttttaatattactgccat 292  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  26091863 tgaaaataccataatacccctg-gttaattttaatatcactgccat 26091907  T

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