View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9282_high_2 (Length: 572)

Name: NF9282_high_2
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9282_high_2
NF9282_high_2
[»] chr1 (6 HSPs)
chr1 (22-261)||(438616-438857)
chr1 (22-261)||(408305-408546)
chr1 (22-338)||(400627-400954)
chr1 (22-208)||(426401-426588)
chr1 (285-341)||(15606328-15606384)
chr1 (268-304)||(426660-426696)
[»] scaffold1626 (1 HSPs)
scaffold1626 (22-261)||(1231-1472)
[»] scaffold0312 (1 HSPs)
scaffold0312 (22-208)||(3962-4149)
[»] chr5 (2 HSPs)
chr5 (284-338)||(39994673-39994727)
chr5 (285-338)||(17501073-17501126)
[»] chr4 (2 HSPs)
chr4 (252-337)||(21757915-21758001)
chr4 (285-338)||(13298535-13298588)
[»] chr3 (2 HSPs)
chr3 (285-338)||(50402655-50402708)
chr3 (294-338)||(53855746-53855790)
[»] scaffold0194 (1 HSPs)
scaffold0194 (273-341)||(13779-13848)
[»] chr7 (2 HSPs)
chr7 (285-338)||(15268542-15268595)
chr7 (285-333)||(39417768-39417816)
[»] chr8 (1 HSPs)
chr8 (286-338)||(45371100-45371152)
[»] chr6 (1 HSPs)
chr6 (246-282)||(5576940-5576976)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 4e-98; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 438616 - 438857
Alignment:
Q  22 ttggtgctaggagataagctacgaccacaaagtaccacttcacttgtgggaacattaaagggataacaatgatggatattacagtgagcactgcataacc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| ||    
T  438616 ttggtgctaggagataagctacgaccacaaagtaccacttcacttgtgggaacattaaagggatcacaatgatggatattatggtgagcactgcatatcc 438715  T
Q  122 tacacatgctaaccatatcggaatgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatctgcaactgaagct 220  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  438716 tgcacatgctaaccatattggaatgctttcttttataaagaattcatcgcgtgtaagatcgtctagagtctggttctggttattatctgcagctgaagct 438815  T
Q  221 gtagtg-agaaatatttatattagattcaatgttgtcaaata 261  Q
    |||||| | |||||| ||||||||||||| ||||||||||||    
T  438816 gtagtgaaaaaatatctatattagattcagtgttgtcaaata 438857  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 408305 - 408546
Alignment:
Q  22 ttggtgctaggagataagctacgaccacaaagtaccacttcacttgtgggaacattaaagggataacaatgatggatattacagtgagcactgcataacc 121  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  408305 ttggtgctaggagataagctaccaccacaaagtaccacttcacttgggggaagattaaagggataacaatgatggatattacagtgagcactgcataccc 408404  T
Q  122 tacacatgctaaccatatcggaatgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatctgcaactgaagct 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||  | |||| ||    
T  408405 tacacatgctaaccatatcggaatgctttcttttataaagaattcatcacgtgtaagatcgtctagagtctggttctggttattatctgtgattgaacct 408504  T
Q  221 gtagt-gagaaatatttatattagattcaatgttgtcaaata 261  Q
     ||||  | |||||| ||||||||||| | | ||||||||||    
T  408505 ctagtaaaaaaatatctatattagatttagttttgtcaaata 408546  T

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Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 22 - 338
Target Start/End: Original strand, 400627 - 400954
Alignment:
Q  22 ttggtgctaggagataagctacgaccacaaagtaccacttcacttgtgggaacattaaagggataacaatgatggatattacagtgagcactgcataacc 121  Q
    |||||||||||||||| || || ||||||||||||||||||||||||||||| || | |||||||||  |||| || ||||| |||||  |  |||| ||    
T  400627 ttggtgctaggagatacgcaaccaccacaaagtaccacttcacttgtgggaatatgagagggataactgtgattgaaattacggtgagtcccacataccc 400726  T
Q  122 tacacatgctaaccatatcggaatgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatctgcaactgaagct 220  Q
    |||||||||||||||||| || ||||||||||||| |||||||||||||||||| |||| |||||| ||| |||||||| |||||| || ||  ||| ||    
T  400727 tacacatgctaaccatattgggatgctttcttttacaaagaattcatcgcgtgttagatcgtctagagtccggttctggctattatttgtaaaggaatct 400826  T
Q  221 gtagtg--agaaatatttatattagattcaatgttgtcaaatagaggc--------gatagtgtagcagaatataacaaatcactattgttctgcaatat 310  Q
    ||| ||  | |||||| || || ||||||| | ||||| ||| | |||         ||||||||||||||||||||||||||| |||||||||| ||||    
T  400827 gtattggaaaaaatatatacatcagattcagtattgtcgaattgtggctatagtgttatagtgtagcagaatataacaaatcaccattgttctgcgatat 400926  T
Q  311 gcactatagtacaaagtgttgtcaaata 338  Q
     || | ||||||||||| ||||||||||    
T  400927 acaatttagtacaaagtattgtcaaata 400954  T

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Target: chr1; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 426401 - 426588
Alignment:
Q  22 ttggtgctaggagataagctacgaccacaaagtaccacttcacttgtgggaacattaaagggataacaatgatggatattacagtgagcactgcataacc 121  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||   |||||||||  |||| || ||||  |||||  ||  ||| ||    
T  426401 ttggtgctaggagataagcaaccaccacaaagtaccacttcacttgtgggaatatgtgagggataactgtgattgaaattatggtgagtcctagataccc 426500  T
Q  122 tacacatgctaaccatatcggaatgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatct 208  Q
    |||| ||||||||||||| || ||||||||||||| ||| |||||||||||||| |||| |||||| ||| |||||||| ||||||||    
T  426501 tacaaatgctaaccatattgggatgctttcttttacaaaaaattcatcgcgtgttagatcgtctagagtccggttctggctattatct 426588  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 15606384 - 15606328
Alignment:
Q  285 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaataaca 341  Q
    ||||||||||||||||||||| ||||||  | ||||||||| |||||||||||||||    
T  15606384 aacaaatcactattgttctgctatatgctatttagtacaaaatgttgtcaaataaca 15606328  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 426660 - 426696
Alignment:
Q  268 atagtgtagcagaatataacaaatcactattgttctg 304  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  426660 atagtgtagcagaatataataaatcactgttgttctg 426696  T

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Target: scaffold1626 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: scaffold1626
Description:

Target: scaffold1626; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 1472 - 1231
Alignment:
Q  22 ttggtgctaggagataagctacgaccacaaagtaccacttcacttgtgggaacattaaagggataacaatgatggatattacagtgagcactgcataacc 121  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  1472 ttggtgctaggagataagctaccaccacaaagtaccacttcacttgggggaagattaaagggataacaatgatggatattacagtgagcactgcataccc 1373  T
Q  122 tacacatgctaaccatatcggaatgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatctgcaactgaagct 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||  | |||| ||    
T  1372 tacacatgctaaccatatcggaatgctttcttttataaagaattcatcacgtgtaagatcgtctagagtctggttctggttattatctgtgattgaacct 1273  T
Q  221 gtagt-gagaaatatttatattagattcaatgttgtcaaata 261  Q
     ||||  | |||||| ||||||||||| | | ||||||||||    
T  1272 ctagtaaaaaaatatctatattagatttagttttgtcaaata 1231  T

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Target: scaffold0312 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 4149 - 3962
Alignment:
Q  22 ttggtgctaggagataagctacgaccacaaagtaccacttcacttgtgggaacattaaagggataacaatgatggatattacagtgagcactgcataacc 121  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||   |||||||||  |||| || ||||  |||||  ||  ||| ||    
T  4149 ttggtgctaggagataagcaaccaccacaaagtaccacttcacttgtgggaatatgtgagggataactgtgattgaaattatggtgagtcctagataccc 4050  T
Q  122 tacacatgctaaccatatcggaatgctttcttttataaagaattcatcgcgtgtaagatagtctag-gtctggttctggttattatct 208  Q
    |||| ||||||||||||| || ||||||||||||| ||| |||||||||||||| |||| |||||| ||| |||||||| ||||||||    
T  4049 tacaaatgctaaccatattgggatgctttcttttacaaaaaattcatcgcgtgttagatcgtctagagtccggttctggctattatct 3962  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 39994673 - 39994727
Alignment:
Q  284 taacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 338  Q
    ||||||| |||||||||||  ||||||||| ||||||||||||||||||||||||    
T  39994673 taacaaaccactattgttcaacaatatgcaatatagtacaaagtgttgtcaaata 39994727  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 17501126 - 17501073
Alignment:
Q  285 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 338  Q
    ||||||| ||||||||||||||||| ||  | |||||||||||| |||||||||    
T  17501126 aacaaataactattgttctgcaatacgctgtttagtacaaagtgctgtcaaata 17501073  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 21757915 - 21758001
Alignment:
Q  252 ttgtcaaatagaggcgatagtgtagcagaatataa-caaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaat 337  Q
    |||||||||||| |  ||||||| ||||||| ||| ||||||||||| ||||||||||||||  | |||| |||||||||| |||||    
T  21757915 ttgtcaaatagaagttatagtgtggcagaatttaaacaaatcactatggttctgcaatatgccatttagtgcaaagtgttgccaaat 21758001  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 13298535 - 13298588
Alignment:
Q  285 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 338  Q
    ||||||||||||||||||||  ||||||  | |||||||||||| |||||||||    
T  13298535 aacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaata 13298588  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 50402708 - 50402655
Alignment:
Q  285 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 338  Q
    |||||||||||||||||| |||||||||  | ||||| ||||||||||||||||    
T  50402708 aacaaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaata 50402655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 53855790 - 53855746
Alignment:
Q  294 ctattgttctgcaatatgcactatagtacaaagtgttgtcaaata 338  Q
    |||||||||||||||||||  | ||||||||| ||||||||||||    
T  53855790 ctattgttctgcaatatgctatttagtacaaaatgttgtcaaata 53855746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 13779 - 13848
Alignment:
Q  273 gtagcagaatat-aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaataaca 341  Q
    |||||||||| | |||||||| |||||||||  ||||||||  | ||||||| |||||||||||||||||    
T  13779 gtagcagaatttgaacaaatctctattgttccacaatatgccgtttagtacatagtgttgtcaaataaca 13848  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 15268542 - 15268595
Alignment:
Q  285 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 338  Q
    ||||||| ||||||||||||||||| ||  | |||||||||||| |||||||||    
T  15268542 aacaaataactattgttctgcaatacgctgtttagtacaaagtgctgtcaaata 15268595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 39417768 - 39417816
Alignment:
Q  285 aacaaatcactattgttctgcaatatgcactatagtacaaagtgttgtc 333  Q
    |||||||||||||||||| || ||||||  ||||||||||| |||||||    
T  39417768 aacaaatcactattgttccgcgatatgctatatagtacaaaatgttgtc 39417816  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 45371152 - 45371100
Alignment:
Q  286 acaaatcactattgttctgcaatatgcactatagtacaaagtgttgtcaaata 338  Q
    ||||| ||||||||||| |||||||||  | ||||||||| ||||||||||||    
T  45371152 acaaaccactattgttccgcaatatgctatttagtacaaaatgttgtcaaata 45371100  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 5576976 - 5576940
Alignment:
Q  246 tcaatgttgtcaaatagaggcgatagtgtagcagaat 282  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  5576976 tcaatgttgtcaaatggaggctatagtgtagcagaat 5576940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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