View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9282_high_23 (Length: 301)

Name: NF9282_high_23
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9282_high_23
NF9282_high_23
[»] chr8 (11 HSPs)
chr8 (13-254)||(41492285-41492526)
chr8 (125-217)||(15004149-15004241)
chr8 (140-217)||(22343008-22343085)
chr8 (140-217)||(22354668-22354745)
chr8 (125-213)||(30233490-30233578)
chr8 (150-254)||(39330537-39330636)
chr8 (155-212)||(33365653-33365710)
chr8 (125-197)||(232657-232729)
chr8 (125-197)||(709068-709140)
chr8 (125-197)||(746280-746352)
chr8 (125-197)||(870175-870247)
[»] chr7 (5 HSPs)
chr7 (125-211)||(10461632-10461718)
chr7 (125-217)||(36107053-36107145)
chr7 (137-216)||(24684932-24685011)
chr7 (125-217)||(24954243-24954335)
chr7 (150-210)||(3935881-3935941)
[»] chr4 (6 HSPs)
chr4 (125-217)||(23722832-23722924)
chr4 (125-211)||(26070984-26071070)
chr4 (125-197)||(42546998-42547070)
chr4 (160-211)||(54578596-54578647)
chr4 (179-216)||(53153366-53153403)
chr4 (141-217)||(39068645-39068720)
[»] chr2 (7 HSPs)
chr2 (127-211)||(8423915-8423999)
chr2 (125-217)||(30357487-30357579)
chr2 (125-212)||(34899164-34899251)
chr2 (141-210)||(27451753-27451822)
chr2 (125-197)||(22416444-22416516)
chr2 (125-196)||(10789141-10789212)
chr2 (137-184)||(16749315-16749362)
[»] chr5 (3 HSPs)
chr5 (125-212)||(29289962-29290049)
chr5 (137-217)||(9889298-9889378)
chr5 (150-224)||(4421028-4421101)
[»] chr6 (5 HSPs)
chr6 (143-217)||(3100550-3100624)
chr6 (125-211)||(18999922-19000008)
chr6 (19-67)||(18667398-18667446)
chr6 (13-67)||(18661675-18661729)
chr6 (137-226)||(24261202-24261291)
[»] scaffold0001 (1 HSPs)
scaffold0001 (125-217)||(396836-396928)
[»] chr3 (6 HSPs)
chr3 (125-217)||(39084725-39084817)
chr3 (125-217)||(48432531-48432623)
chr3 (18-69)||(5685924-5685975)
chr3 (125-211)||(44269771-44269857)
chr3 (125-211)||(45222326-45222412)
chr3 (125-217)||(4773824-4773916)
[»] chr1 (8 HSPs)
chr1 (125-217)||(14796072-14796164)
chr1 (125-217)||(21969376-21969468)
chr1 (137-263)||(26262192-26262314)
chr1 (137-217)||(8059665-8059745)
chr1 (125-217)||(14804946-14805038)
chr1 (141-225)||(32829357-32829440)
chr1 (125-213)||(31964294-31964383)
chr1 (141-217)||(1246900-1246975)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 41492285 - 41492526
Alignment:
Q  13 tttcgtgttaaatacatattttatacaagttgtctaaaagatttgtgtctaaactacnnnnnnnnnnnnnnnnnnnnnnacttacattcaacgaagttat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||    
T  41492285 tttcgtgttaaatacatattttatacaagttgtctaaaagatttgtgtctaaactacttttgatttaatttttatttttacttacattcaacgaagttat 41492384  T
Q  113 caggcccggctgggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaata 212  Q
     |||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  41492385 gaggcccggctggaggtgtatgtaggtcggtttgggttggggttggccaaacccaaaacccgaactatatagtgtactccggtttaggtgaggtaaaata 41492484  T
Q  213 accactagttatatataccattggatgggtttggataaaccc 254  Q
    ||||| | |||||||||| ||||| |||||||||||||||||    
T  41492485 accaccaattatatatactattgggtgggtttggataaaccc 41492526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 15004149 - 15004241
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || || |||||||| ||||| |||||||||| |||||||| ||| |||||| |||||||||||| | |||||||||||| ||||    
T  15004149 ggggtgtaagtgggccggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccac 15004241  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 22343085 - 22343008
Alignment:
Q  140 cggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| ||||| |||||||||| |||||||| ||| |||||| |||||||||||| | |||||||||||| ||||    
T  22343085 cggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccac 22343008  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 22354745 - 22354668
Alignment:
Q  140 cggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| ||||| |||||||||| |||||||| ||| |||||| |||||||||||| | |||||||||||| ||||    
T  22354745 cggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaatatccac 22354668  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 30233578 - 30233490
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataa 213  Q
    |||||||| || ||||||||||| ||||| ||| |||||| ||| |||||||| ||| || ||||||||||| || |||||||||||||    
T  30233578 ggggtgtacgtgggtcggtttgggttgggtttgaccaaacccaagacccgaaccatagagggtactccggttaaggtgaggtaaaataa 30233490  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 39330537 - 39330636
Alignment:
Q  150 tggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccactagttatatataccattggatgggtttggata 249  Q
    |||| |||||||||| |||||||  ||| | |||| |||||||| |||||||||||||||||||||||  ||    ||||| |||||||||||||||| |    
T  39330537 tgggtttggccaaacccaaaacca-aaccaaatagggtactccgatttagatgaggtaaaataaccacctgt----tatactattggatgggtttggaca 39330631  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 33365710 - 33365653
Alignment:
Q  155 ttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaata 212  Q
    |||||||||| ||| |||||||| |||||| |||||||||||| ||| ||||||||||    
T  33365710 ttggccaaacccaagacccgaaccatatagggtactccggtttggattaggtaaaata 33365653  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 232729 - 232657
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggttt 197  Q
    |||||||| || ||||| ||||| ||||| |||| ||||  ||| ||||||| ||||||| ||||||||||||    
T  232729 ggggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggttt 232657  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 709140 - 709068
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggttt 197  Q
    |||||||| || ||||| ||||| ||||| |||| ||||  ||| ||||||| ||||||| ||||||||||||    
T  709140 ggggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggttt 709068  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 746352 - 746280
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggttt 197  Q
    |||||||| || ||||| ||||| ||||| |||| ||||  ||| ||||||| ||||||| ||||||||||||    
T  746352 ggggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggttt 746280  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 870247 - 870175
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggttt 197  Q
    |||||||| || ||||| ||||| ||||| |||| ||||  ||| ||||||| ||||||| ||||||||||||    
T  870247 ggggtgtacgtgggtcgatttgggttgggtttggtcaaatccaagacccgaattatatagagtactccggttt 870175  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 10461718 - 10461632
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaat 211  Q
    |||||||| || || |||||||| ||||| |||||||||| |||||||| ||| |||||| |||||||||||| | |||||||||||    
T  10461718 ggggtgtaagtgggccggtttgggttgggtttggccaaacccaaaacccaaaccatatagggtactccggtttgggtgaggtaaaat 10461632  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 36107053 - 36107145
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||||| ||||| ||||| |||||||||| ||| |||||||| |||||| |||||||||||| | | |||||||||| ||||    
T  36107053 ggggtgtaagtgggtcgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccac 36107145  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 24684932 - 24685011
Alignment:
Q  137 ggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataacca 216  Q
    ||||||||||| ||||| |||||||||| |||||||||||| | ||||   |||||| ||||| ||||||||||||||||    
T  24684932 ggtcggtttgggttgggtttggccaaacccaaaacccgaaccacataggagactccgatttaggtgaggtaaaataacca 24685011  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 24954243 - 24954335
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||| | ||||||||||| |||| ||||| ||| |||||||| |||||  |||||||||||| ||| |||||||||| ||||    
T  24954243 ggggtgtaagtgggttgatttggattgggtttggacaaacccaagacccgaaccatataaggtactccggtttggattaggtaaaatatccac 24954335  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 3935881 - 3935941
Alignment:
Q  150 tggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaa 210  Q
    |||| |||||||||| ||| |||||||| ||||||  ||||||||||| |||||| |||||    
T  3935881 tgggtttggccaaacccaagacccgaaccatataggatactccggtttggatgagataaaa 3935941  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 23722832 - 23722924
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||||| ||||| ||||| |||||||||| ||| |||||||| |||||| |||||||||||| | | |||||||||| ||||    
T  23722832 ggggtgtacgtgggtcgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccac 23722924  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 26070984 - 26071070
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaat 211  Q
    |||||||| || || |||||||| ||||| |||||||||| ||||||||  || |||||| |||||||||||| | |||||||||||    
T  26070984 ggggtgtaagtgggccggtttgggttgggtttggccaaacccaaaacccataccatatagggtactccggtttgggtgaggtaaaat 26071070  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 42546998 - 42547070
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggttt 197  Q
    |||||||| || ||||| ||||||||||| |||||||||| ||| | |||||| |||||| ||||||||||||    
T  42546998 ggggtgtaagtgggtcgatttggattgggtttggccaaacccaagatccgaaccatatagggtactccggttt 42547070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 54578647 - 54578596
Alignment:
Q  160 caaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaat 211  Q
    ||||| ||| ||||||||||||||| |||| ||||||| |||||||||||||    
T  54578647 caaacccaagacccgaactatatagggtaccccggtttggatgaggtaaaat 54578596  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 53153403 - 53153366
Alignment:
Q  179 atatagtgtactccggtttagatgaggtaaaataacca 216  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  53153403 atatagggtactccggtttaggtgaggtaaaataacca 53153366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 39068720 - 39068645
Alignment:
Q  141 ggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    ||||||| ||||| ||||||||||||||||||  ||| | |||  || ||||||||| | |||||||||||||||||    
T  39068720 ggtttgggttgggtttggccaaactcaaaacca-aaccaaataaggttctccggtttgggtgaggtaaaataaccac 39068645  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 8423999 - 8423915
Alignment:
Q  127 ggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaat 211  Q
    |||||| || ||| ||||||| ||||| ||| |||||| |||||||||||| |||||| |||||||||||| | |||||||||||    
T  8423999 ggtgtacgtgggtgggtttgggttgggtttgaccaaacccaaaacccgaaccatatagagtactccggtttgggtgaggtaaaat 8423915  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 30357579 - 30357487
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||||| ||||| ||||| |||||||||| ||| |||||||| |||||| |||||||||||| | | |||||||||| ||||    
T  30357579 ggggtgtaagtgggtcgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccac 30357487  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 34899164 - 34899251
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaata 212  Q
    |||||||| || ||||| ||||| ||||| |||||||||| ||| |||| |||||||||| |||||||||||| | | ||||||||||    
T  34899164 ggggtgtaagtgggtcgatttgggttgggtttggccaaacccaagacccaaactatatagggtactccggtttgggttaggtaaaata 34899251  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 27451822 - 27451753
Alignment:
Q  141 ggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaa 210  Q
    ||||||||||||| |||||||||| ||| |||||||| ||||||  |||||| |||| | ||||||||||    
T  27451822 ggtttggattgggtttggccaaacccaagacccgaaccatataggatactccagtttgggtgaggtaaaa 27451753  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 22416444 - 22416516
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggttt 197  Q
    |||||||| || ||| | ||||| ||||| |||||||||| ||| |||||||| |||||| ||||||||||||    
T  22416444 ggggtgtaagtgggttgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggttt 22416516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 10789212 - 10789141
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtt 196  Q
    |||||||| || ||| | ||||| ||||| |||||||||| ||| |||||||| |||||| |||||||||||    
T  10789212 ggggtgtaagtgggttgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtt 10789141  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 16749315 - 16749362
Alignment:
Q  137 ggtcggtttggattggggttggccaaactcaaaacccgaactatatag 184  Q
    ||||||||||||||| | |||||||||| |||||||||||| ||||||    
T  16749315 ggtcggtttggattgagtttggccaaacccaaaacccgaaccatatag 16749362  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 29290049 - 29289962
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaata 212  Q
    |||||||| || ||||| ||||| ||||| |||||||||| ||| |||||||| |||||| |||||||||||||| | || |||||||    
T  29290049 ggggtgtaagtgggtcgatttgggttgggtttggccaaacccaagacccgaaccatatagagtactccggtttaggttagataaaata 29289962  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 9889378 - 9889298
Alignment:
Q  137 ggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    ||||| ||||| ||||| |||||||||| | | |||||||| |||||| |||||||||||| | | |||||||||| ||||    
T  9889378 ggtcgatttgggttgggtttggccaaacccgagacccgaaccatatagggtactccggtttgggttaggtaaaatatccac 9889298  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 4421028 - 4421101
Alignment:
Q  150 tggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccactagttat 224  Q
    |||| |||||||||| |||||||  ||||| |||| ||||| |||||| | |||||||||||||||||| |||||    
T  4421028 tgggtttggccaaacccaaaacca-aactaaatagggtacttcggtttgggtgaggtaaaataaccactcgttat 4421101  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 3100550 - 3100624
Alignment:
Q  143 tttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    ||||| ||||| |||||||||| ||| |||||||| |||||| |||||||||||| ||| |||||||||| ||||    
T  3100550 tttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttggattaggtaaaatatccac 3100624  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 19000008 - 18999922
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaat 211  Q
    |||||||| || ||| ||||||| ||||| |||||||||| ||| | ||||||||||||| |||||| ||||| | |||||||||||    
T  19000008 ggggtgtacgtgggtgggtttgggttgggtttggccaaacccaagatccgaactatatagagtactctggtttgggtgaggtaaaat 18999922  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 18667446 - 18667398
Alignment:
Q  19 gttaaatacatattttatacaagttgtctaaaagatttgtgtctaaact 67  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||||    
T  18667446 gttaaatacctattttgtacaagttgtctataagatttgtgtctaaact 18667398  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 18661729 - 18661675
Alignment:
Q  13 tttcgtgttaaatacatattttatacaagttgtctaaaagatttgtgtctaaact 67  Q
    ||||| |||| |||| |||||| ||||||||||| ||||||||||||||||||||    
T  18661729 tttcgcgttagatacctattttgtacaagttgtcgaaaagatttgtgtctaaact 18661675  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 24261202 - 24261291
Alignment:
Q  137 ggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccactagttatat 226  Q
    ||||||||||| ||||| ||||  |||| |||||||| ||| | ||||  ||||||||||| | |||||||||| |||||| ||||||||    
T  24261202 ggtcggtttgggttgggtttggtaaaacccaaaacccaaaccacatagaatactccggtttgggtgaggtaaaacaaccaccagttatat 24261291  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 396836 - 396928
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||||| ||||| ||||| ||||| |||| ||| |||||||| |||||| |||||||||||| | | |||||||||| ||||    
T  396836 ggggtgtaagtgggtcgatttgggttgggtttggctaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccac 396928  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 39084725 - 39084817
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||| | ||||| ||||| |||||||||| ||| |||| |||||||||| |||||||||||| | | |||||||||| ||||    
T  39084725 ggggtgtaagtgggttgatttgggttgggtttggccaaacccaagaccctaactatatagggtactccggtttgggttaggtaaaatatccac 39084817  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 48432531 - 48432623
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||||| ||||| ||||| |||||||||| ||| |||||||| ||||||  ||||||||||| | | |||||||||| ||||    
T  48432531 ggggtgtaagtgggtcgatttgggttgggtttggccaaacccaagacccgaaccatataggatactccggtttgggttaggtaaaatatccac 48432623  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 5685975 - 5685924
Alignment:
Q  18 tgttaaatacatattttatacaagttgtctaaaagatttgtgtctaaactac 69  Q
    |||||||||| |||||| | |||||||||| |||||||||||||||||||||    
T  5685975 tgttaaatacctattttgtgcaagttgtcttaaagatttgtgtctaaactac 5685924  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 44269771 - 44269857
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaat 211  Q
    |||||||| || || |||||||| ||||| |||||||||| |||||||| ||| |||||  |||||||||||| | |||| ||||||    
T  44269771 ggggtgtaagtgggccggtttgggttgggtttggccaaacccaaaacccaaaccatataaggtactccggtttgggtgagataaaat 44269857  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 45222326 - 45222412
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaat 211  Q
    |||||||| || ||| ||||||| ||||| ||| |||||| ||| |||||||| |||||| |||| ||||||| | |||||||||||    
T  45222326 ggggtgtacgtgggtgggtttgggttgggtttgaccaaacccaagacccgaaccatatagggtaccccggtttgggtgaggtaaaat 45222412  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 4773824 - 4773916
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||| | ||||| ||||| |||||||||| |||  ||||||| |||||| |||||||||||| | | |||||||||| ||||    
T  4773824 ggggtgtaagtgggttgatttgggttgggtttggccaaacccaaggcccgaaccatatagggtactccggtttgggttaggtaaaatatccac 4773916  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 14796164 - 14796072
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||| | ||||| ||||| |||| ||||| ||| ||||||||||||||| |||||||||||| | | |||||||||| ||||    
T  14796164 ggggtgtaagtgggttgatttgggttgggtttggtcaaacccaagacccgaactatatagggtactccggtttgggttaggtaaaatatccac 14796072  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 21969468 - 21969376
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||| | ||||| ||||| |||||||||| ||| |||||||| |||||| |||||||||||| | | |||||||||| ||||    
T  21969468 ggggtgtaagtgggttgatttgggttgggtttggccaaacccaagacccgaaccatatagggtactccggtttgggttaggtaaaatatccac 21969376  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 26262192 - 26262314
Alignment:
Q  137 ggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccactagttatatataccattgg 236  Q
    ||||||||||| ||||| |||||| ||| |||||| | ||| |||||  |||||| ||||| | ||||||||||||| |||  |||||||    ||||||    
T  26262192 ggtcggtttgggttgggtttggcccaacccaaaactcaaaccatataaggtactctggtttgggtgaggtaaaataatcacatgttatat----cattgg 26262287  T
Q  237 atgggtttggataaaccctttgatttt 263  Q
    ||||||||||  |||||| || |||||    
T  26262288 atgggtttgggcaaacccgttaatttt 26262314  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 8059745 - 8059665
Alignment:
Q  137 ggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    ||||| ||||| ||||| |||||||||| ||| |||| ||| |||||| |||||||||||| | | |||||||||| ||||    
T  8059745 ggtcgatttgggttgggtttggccaaacccaagacccaaaccatatagggtactccggtttgggttaggtaaaatatccac 8059665  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 14805038 - 14804946
Alignment:
Q  125 ggggtgtatgtaggtcggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    |||||||| || ||| | ||||| ||||| |||| ||||| |||  |||||||||||||| |||||||||||| | | |||||||||| ||||    
T  14805038 ggggtgtaagtgggttgatttgggttgggtttggtcaaacccaagtcccgaactatatagggtactccggtttgggttaggtaaaatatccac 14804946  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 32829357 - 32829440
Alignment:
Q  141 ggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccactagttata 225  Q
    ||||||| ||||| |||||||||| |||||||  ||| | ||||  ||||||||||| | |||||||||||||||||| ||||||    
T  32829357 ggtttgggttgggtttggccaaacccaaaacca-aaccaaataggctactccggtttgggtgaggtaaaataaccactcgttata 32829440  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 31964383 - 31964294
Alignment:
Q  125 ggggtgtatgtaggt-cggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataa 213  Q
    |||||||| |||||| |||||||  ||| | ||| |||||| |||||| ||||| |||||| ||||||||||||   |||||||||||||    
T  31964383 ggggtgtacgtaggttcggtttgagttgtgtttgaccaaacccaaaactcgaaccatatagggtactccggtttgagtgaggtaaaataa 31964294  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 1246975 - 1246900
Alignment:
Q  141 ggtttggattggggttggccaaactcaaaacccgaactatatagtgtactccggtttagatgaggtaaaataaccac 217  Q
    ||||||| ||||| |||||||||| ||| |||  ||| | |||||||||| |||||||| |||| ||||||||||||    
T  1246975 ggtttgggttgggtttggccaaacccaagacca-aaccaaatagtgtacttcggtttaggtgagataaaataaccac 1246900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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