View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_high_3 (Length: 566)
Name: NF9282_high_3
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 15 - 547
Target Start/End: Original strand, 41547398 - 41547930
Alignment:
| Q |
15 |
cagagacatttaagctcatcaatagtttggaatcatcctccagccttgaaactttttcatgcaagactctaaacttcgtgatccaagacgctagtaatat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41547398 |
cagagacatttaagctcatcaatagtttggaatcatcctccagccttgaaactttttcatgcaagactctaaacttcgtgatccaagacgctagtaatat |
41547497 |
T |
|
| Q |
115 |
gtcaacattgtgcttatcatttgctaatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccattt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41547498 |
gtcaacattgtgcttatcatttgctaatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccattt |
41547597 |
T |
|
| Q |
215 |
ttaatctcaattccagcccacacaatacaatcttcctcccatttttccttcaactttgtcaactccaaaaccttattctccatctcaccagtcacttttc |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41547598 |
ttaatctcaattccagcccacacaatacaatcttcctcccatttttccttcaactttgtcaactccaaaaccttattctccatctcaccagtcacttttc |
41547697 |
T |
|
| Q |
315 |
tctgcacaccaagctcacagccatcctccgccgttttttccgtcaacctattaacctcagtcttcaagtcatcattcttttttcttagaacttcaaattt |
414 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41547698 |
tctgcacaccaagctcacagccatcctccgccgttttttccgtcaacctattaacctcagtcttcaagtcatcattcttttttcttagaacttcaaattt |
41547797 |
T |
|
| Q |
415 |
gttcccatcctccaccctatcttccttcaacttattaacctcacactctagctcatcactcttctttcttaacacttcaaatttgttcccatactccacc |
514 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41547798 |
gttcccatcctccaccctatcttccttcaaattattaacctcacactctagctcatcactcttctttcttaacacttcaaatttgttcccatactccacc |
41547897 |
T |
|
| Q |
515 |
atatcttccttcaacctattaacctcacactcc |
547 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
41547898 |
atatcttccttcaacctattaacctcacactcc |
41547930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 383 - 547
Target Start/End: Original strand, 41547850 - 41548014
Alignment:
| Q |
383 |
tcatcattcttttttcttagaacttcaaatttgttcccatcctccaccctatcttccttcaacttattaacctcacactctagctcatcactcttctttc |
482 |
Q |
| |
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|||||| |||| ||||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| | ||||||| |||| |||| |
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| T |
41547850 |
tcatcactcttctttcttaacacttcaaatttgttcccatactccaccatatcttccttcaacctattaacctcacactccaactcatcattcttttttc |
41547949 |
T |
|
| Q |
483 |
ttaacacttcaaatttgttcccatactccaccatatcttccttcaacctattaacctcacactcc |
547 |
Q |
| |
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| ||||| |||||||||||||||| ||||||| | ||||| | ||| ||||||||||||||||| |
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| T |
41547950 |
tcaacacatcaaatttgttcccatcctccaccctttcttcttccaatttattaacctcacactcc |
41548014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 352 - 494
Target Start/End: Original strand, 41547903 - 41548045
Alignment:
| Q |
352 |
ttccgtcaacctattaacctcagtcttcaagtcatcattcttttttcttagaacttcaaatttgttcccatcctccaccctatcttccttcaacttatta |
451 |
Q |
| |
|
|||| ||||||||||||||||| || ||| ||||||||||||||||| | || |||||||||||||||||||||||||| ||||| | ||| |||||| |
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| T |
41547903 |
ttccttcaacctattaacctcacactccaactcatcattcttttttctcaacacatcaaatttgttcccatcctccaccctttcttcttccaatttatta |
41548002 |
T |
|
| Q |
452 |
acctcacactctagctcatcactcttctttcttaacacttcaa |
494 |
Q |
| |
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||||||||||| | |||| || |||| | ||| |||||||||| |
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| T |
41548003 |
acctcacactccaactcaccattcttttgtctcaacacttcaa |
41548045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 41519282 - 41519365
Alignment:
| Q |
149 |
ttttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc |
232 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||| |||| |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
41519282 |
ttttcgttcctcagctcgcttataattgccaaattcgtgttaactgtttccttcaattcgccatttttaatctcaattccagcc |
41519365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 41509050 - 41509145
Alignment:
| Q |
137 |
gctaatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc |
232 |
Q |
| |
|
|||||||| || ||||||||||||| || |||||| ||||||||||| | || |||||||| |||||||||| |||||| || |||||||||||| |
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| T |
41509050 |
gctaattttctgttttcgttcctcagctcgcttataattgccaaattcgtattcactgtttccttcaattcactattttttatttcaattccagcc |
41509145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 41503562 - 41503635
Alignment:
| Q |
148 |
attttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatct |
221 |
Q |
| |
|
|||||| ||||||| || ||||||||| |||||||||| || | |||||| |||||||||||| ||||||||| |
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| T |
41503562 |
attttctttcctcagctcacttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatct |
41503635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 41499369 - 41499453
Alignment:
| Q |
148 |
attttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc |
232 |
Q |
| |
|
|||||| ||||||| || ||||||||| |||||||||| || | |||||| |||||||||||| ||| ||||| || ||||||| |
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| T |
41499369 |
attttctttcctcagctcacttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagcc |
41499453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 33080012 - 33080040
Alignment:
| Q |
257 |
ttttccttcaactttgtcaactccaaaac |
285 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
33080012 |
ttttccttcaactttgtcaactccaaaac |
33080040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 41469535 - 41469579
Alignment:
| Q |
177 |
ccaaattcttgtttactgtttcattcaattcaccatttttaatct |
221 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||| |||||||||||| |
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|
| T |
41469535 |
ccaaattcttctttgctgtttccttcaattcatcatttttaatct |
41469579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 41503905 - 41503997
Alignment:
| Q |
140 |
aatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc |
232 |
Q |
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|||||||| ||||| |||||||| || |||||||||||||||| ||| | || ||| | |||||||| | ||||||| ||| |||| ||||| |
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| T |
41503905 |
aatttgctgttttctttcctcaactcgcttatagttgccaaatacttcgtcacagttgccttcaattcgctatttttactcttaatttcagcc |
41503997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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