View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_high_4 (Length: 529)
Name: NF9282_high_4
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 5 - 512
Target Start/End: Original strand, 23017078 - 23017583
Alignment:
| Q |
5 |
gtggagaagcagagacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtcac |
104 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017078 |
gtggagaaacagacacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtcac |
23017177 |
T |
|
| Q |
105 |
acatccactgcattacaaaacaaacttagaaactacggtttttacattatcaactacatcatagacnnnnnnnnnnnnnnnnnaaaactcagtatccgac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23017178 |
acatccactgcattacaaaacaaacttagaaactacggtttttacattatcaactacatcatagactattttttttttttt--aaaactcagtatccgac |
23017275 |
T |
|
| Q |
205 |
tgaagacaaccgtccactagcaggggcctaattgatgctagaacaaagctctacatggattggccccacccaaacatacttagttattaatggaaaaaag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017276 |
tgaagacaaccgtccactagcaggggcctaattgatgctagaacaaagctctacatggattggccccacccaaacatacttagttattaatggaaaaaag |
23017375 |
T |
|
| Q |
305 |
taactaacttgacggaagcataacaaaataaaagtggagggggagtaacctgcatgccaagcaatccttgagcgaaattttaacaggtttggacttcact |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017376 |
taactaacttgacggaagcataacaaaataaaagtggagggggagtaacctgcatgccaagcaatccttgagcgaaattttaacaggtttggacttcact |
23017475 |
T |
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| Q |
405 |
tgtctgtcagcgactttgaccttcaaataacaaacaagtttcgttgggattcacaagcatgaagtaaaataaattgattttgttaagtaactacatataa |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017476 |
tgtctgtcagcgactttgaccttcaaataacaaacaagtttcgttgggattcacaagcatgaagtaaaataaattgattttgttaagtaactacatataa |
23017575 |
T |
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| Q |
505 |
atagtaat |
512 |
Q |
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|||||||| |
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| T |
23017576 |
atagtaat |
23017583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 54914472 - 54914348
Alignment:
| Q |
5 |
gtggagaagcagagacaatcactgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtcac |
104 |
Q |
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|||||||| |||| |||||||||| |||||||| ||| |||||||||| |||||||||||||||||| || | ||||| |||||||| |||||||| || |
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| T |
54914472 |
gtggagaaacagacacaatcactgcctttcctttattaatattggacagaaactcatccaaaccttgcttctccagcataaccgtctctgctgatgtgac |
54914373 |
T |
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| Q |
105 |
acatccactgcattacaaaacaaac |
129 |
Q |
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| T |
54914372 |
acatccactgtattaccaaacaaac |
54914348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 417
Target Start/End: Complemental strand, 54913037 - 54912970
Alignment:
| Q |
350 |
taacctgcatgccaagcaatccttgagcgaaattttaacaggtttggacttcacttgtctgtcagcga |
417 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54913037 |
taacctgcatgccaaacaatccttaagcgaaattttaacaggttctgacttcacttgtctgtcagcga |
54912970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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