View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_high_7 (Length: 481)
Name: NF9282_high_7
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 20519862 - 20519610
Alignment:
| Q |
16 |
ctacctacctatagattctctgttattctgtttctaacttatcagagaacctacattaaacttataagtatataagctagttgttaaaatactcatggtg |
115 |
Q |
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| T |
20519862 |
ctacctacctatagattctctgttattctgtttctaacttattagagaacctacattaaacttataagtatataagctagtagttaaaatactcatggtg |
20519763 |
T |
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| Q |
116 |
gcatggttattaagctgatttcatgttttctcttatataagtacttaaagaaaacacttatccgaactatctcaattgtgaagtaacttagcctagacaa |
215 |
Q |
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| T |
20519762 |
acatggttattaagctgatttcatgttttctcttatataagtacttaaagaaaacacttatccgaactatctcaattgtgaagtaacttagcctagacaa |
20519663 |
T |
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| Q |
216 |
attaaacaattacatgtacactcccaagtcccaacctcaaacaaaattcctca |
268 |
Q |
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| T |
20519662 |
attaaacaattacatgtacactcccaagtcccaacctcaaacaaaattcctca |
20519610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 266 - 471
Target Start/End: Complemental strand, 20519550 - 20519345
Alignment:
| Q |
266 |
tcataacttatcatgttgcagtcacactgacaaaagcagccaatgcagctacatttgcaatgccgtcgcagagacctctaaaatctgtattgctacttca |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20519550 |
tcataacttatcatgttgcagtcacactgacaaaagcagccaatgcagctacatttgcaatgccgtcgcagagatctctaaaatctgtattgctacttca |
20519451 |
T |
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| Q |
366 |
attgcatacctcaatttagaactatgatgtaaactatactacaattgcataacacaatttagacatatggtacaaactagaaagtaagaagctttatatt |
465 |
Q |
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| T |
20519450 |
attgcatacctcaaattagaactatgatgtaaactatactacaattgcataacacaatttagacatatggtacaaactagaaagtaagaagctttatatt |
20519351 |
T |
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| Q |
466 |
gagaat |
471 |
Q |
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|||||| |
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| T |
20519350 |
gagaat |
20519345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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