View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9282_low_12 (Length: 526)

Name: NF9282_low_12
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9282_low_12
NF9282_low_12
[»] chr6 (2 HSPs)
chr6 (43-299)||(14163873-14164129)
chr6 (326-511)||(14163661-14163846)
[»] chr5 (1 HSPs)
chr5 (18-70)||(32703301-32703353)
[»] chr1 (2 HSPs)
chr1 (87-133)||(27976511-27976558)
chr1 (87-119)||(37473330-37473362)
[»] chr4 (2 HSPs)
chr4 (90-147)||(3070083-3070141)
chr4 (18-68)||(17822890-17822940)
[»] chr8 (2 HSPs)
chr8 (18-63)||(42622891-42622936)
chr8 (87-119)||(1058181-1058213)
[»] chr7 (1 HSPs)
chr7 (89-145)||(46078051-46078108)
[»] chr3 (1 HSPs)
chr3 (87-119)||(20880408-20880440)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 43 - 299
Target Start/End: Complemental strand, 14164129 - 14163873
Alignment:
Q  43 agcttaggaaaataacttatagcatacaataacaattaactttatgctataaaaatatcttatgtaagcttatacatgaggattatcatgaaaagtgttt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  14164129 agcttaggaaaataacttatagcatacaataacaattaactttatgctataaaaatatcttatgtaagcttatacataaggattatcatgataagtgttt 14164030  T
Q  143 gtgttatattaggaaaaaagaaacacaagggtttgtgctataatcagataataagctatttatccaaacacaaccgtaaaatttgtaacctaaaactgtt 242  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14164029 gtgttatattaggaaaaaataaacacaagggtttgtgctataatcagctaataagctatttatccaaacacaaccgtaaaatttgtaacctaaaactgtt 14163930  T
Q  243 gtggagtatgggaagtaagaagcaacttcaactcttgcaagctccatgataaagggc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14163929 gtggagtatgggaagtaagaagcaacttcaactcttgcaagctccatgataaagggc 14163873  T

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Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 326 - 511
Target Start/End: Complemental strand, 14163846 - 14163661
Alignment:
Q  326 tattgtgtaaataaatttaaagtttgctagaaggctagttaaagtaattatgaataaatggagcatgcaaatttatgccttcataagtgtaaatttaaaa 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14163846 tattgtgtaaataaatttaaagtttgctagaaggctagttaaagtaattatgaatcaatggagcatgcaaatttatgccttcataagtgtaaatttaaaa 14163747  T
Q  426 acaaagataacaaaaaactaatcttaacatgtggttcttctgagtggtaagacacttgaacgccttaaacaagtggtctgatgtcc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  14163746 acaaagataacaaaaaactaatcttaacatgtggttcttctgagtggtaagacacttgaacaccttaaacaagtggtctgaagtcc 14163661  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 32703301 - 32703353
Alignment:
Q  18 cttatttttataacttctccaagagagcttaggaaaataacttatagcataca 70  Q
    ||||||||||||| |||||| ||| |||||| ||||| |||||||||||||||    
T  32703301 cttatttttataaattctcctagatagcttatgaaaacaacttatagcataca 32703353  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 27976558 - 27976511
Alignment:
Q  87 tgctataaaaatatcttatgtaagcttatacatgagga-ttatcatga 133  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  27976558 tgctataaaaatagcttatgtaagcttatacataaggacttatcatga 27976511  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 37473362 - 37473330
Alignment:
Q  87 tgctataaaaatatcttatgtaagcttatacat 119  Q
    ||||||||||||| |||||||||||||||||||    
T  37473362 tgctataaaaatagcttatgtaagcttatacat 37473330  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 3070083 - 3070141
Alignment:
Q  90 tataaaaatatcttatgtaagcttatacatgag-gattatcatgaaaagtgtttgtgtt 147  Q
    |||||||||| |||||||||||||||| ||||| | ||||||||| |||||| ||||||    
T  3070083 tataaaaataacttatgtaagcttatatatgagtgtttatcatgacaagtgtatgtgtt 3070141  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 17822890 - 17822940
Alignment:
Q  18 cttatttttataacttctccaagagagcttaggaaaataacttatagcata 68  Q
    |||||||| |||| |||||||||| |||||| ||||| |||||||||||||    
T  17822890 cttattttcataagttctccaagatagcttatgaaaacaacttatagcata 17822940  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 42622936 - 42622891
Alignment:
Q  18 cttatttttataacttctccaagagagcttaggaaaataacttata 63  Q
    ||||||||||||| |||||||||| ||||||| |||| ||||||||    
T  42622936 cttatttttataaattctccaagatagcttagaaaaacaacttata 42622891  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 1058181 - 1058213
Alignment:
Q  87 tgctataaaaatatcttatgtaagcttatacat 119  Q
    ||||||||||||| |||||||||||||||||||    
T  1058181 tgctataaaaatagcttatgtaagcttatacat 1058213  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 46078108 - 46078051
Alignment:
Q  89 ctataaaaatatcttatgtaagcttatacatgag-gattatcatgaaaagtgtttgtg 145  Q
    ||||||||||| ||||||||||||||||||| || | ||||||||| | |||||||||    
T  46078108 ctataaaaataacttatgtaagcttatacataagcgcttatcatgatatgtgtttgtg 46078051  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 119
Target Start/End: Complemental strand, 20880440 - 20880408
Alignment:
Q  87 tgctataaaaatatcttatgtaagcttatacat 119  Q
    ||||||||||||| |||||||||||||||||||    
T  20880440 tgctataaaaatagcttatgtaagcttatacat 20880408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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