View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_15 (Length: 519)
Name: NF9282_low_15
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 512
Target Start/End: Complemental strand, 47773574 - 47773079
Alignment:
| Q |
17 |
agatgatggtaattaggtacctggagaagtgttgttggtggatggtggtgagtctaagacaatcgtcgaattgaagaagcgataaggatcaaatctaaga |
116 |
Q |
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| T |
47773574 |
agatgatggtaatttggtacctgaagaagtgttattggtggatggtggtgagtctaagacaatcgtggaattgaagaagcgataaggatcatatctaaga |
47773475 |
T |
|
| Q |
117 |
cgacaacttggtttaagaacatttcctcccctcttcccgttacagcaatttgggatttctgagatagctgtgttcaagcaatcggtgcattgttgtgatg |
216 |
Q |
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| T |
47773474 |
cgacaacttggtttaagaacatttcctcccatcttcccgttacaacaatttgggatttctgagatagctgcgttcaagcaatcggtgcattgttgcgatg |
47773375 |
T |
|
| Q |
217 |
acaaatcaggtgtacacaaaacataaccgtatatggttgcaaaatttgcaggatcatacacactatctgcatcatacttacgacgagagtcacctgatgc |
316 |
Q |
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| T |
47773374 |
acaaatcaggcatacaaagcacataaccgtatatggtttcgaaacttgtagtttcaaagacactatctgcttcgtacttacgacgcgagtcacctaaagc |
47773275 |
T |
|
| Q |
317 |
agctttggccgttagattttgcatcaagttactcagtgcttgcttgtactgatccgcatcacttgcattgctatctaaaaacaaatatcgtgtagttgaa |
416 |
Q |
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||||||||||||||||||| ||||||||||| || ||||||| ||||||||||| ||| ||||| ||| | | |||| ||||||| |||||| |||| |
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| T |
47773274 |
agctttggccgttagatttcgcatcaagttagccactgcttgcatgtactgatccacataacttgtattccgttgtaaatacaaatagagtgtaggtgaa |
47773175 |
T |
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| Q |
417 |
gtttttaagagcccaaaaattaagctattcgagtaccataaagtgaaatcaccaccccacacaattgcctctttttgatttggacactgctctctg |
512 |
Q |
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| T |
47773174 |
gtttccaagagcccaaaaattgagcgattcgagtaccacaaagtgaaatcaccaccccacacaattgcctctttttggtttggacactgctctctg |
47773079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 69 - 511
Target Start/End: Complemental strand, 47765121 - 47764690
Alignment:
| Q |
69 |
tctaagacaatcgtcgaattgaagaagcgataaggatcaaatctaagacgacaacttggtttaagaacatttcctcccctcttcccgttacagcaatttg |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| |||| || |
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| T |
47765121 |
tctaagacaatcgtcgaattgaagaagcgataaggatcaaatctaatccgacaacttggtttaagaatatttcctcccatcttcccgttacaacaatctg |
47765022 |
T |
|
| Q |
169 |
ggatttctgagatag-ctgtgttcaagcaatcggtgcattgttgtgatgacaaatcaggtgtacacaaaacataaccgtatatggttgcaaaatttgcag |
267 |
Q |
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| T |
47765021 |
ggatttctgaaatggtctgagc-caagcaatcattgcattgttgcgatgacaaatcagg-----------cataaccgtatatggttgcataatttgaag |
47764934 |
T |
|
| Q |
268 |
gatcatacacactatctgcatcatacttacgacgagagtcacctgatgcagctttggccgttagattttgcatcaagttactcagtgcttgcttgtactg |
367 |
Q |
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| T |
47764933 |
catcatacacactatctgcatcatacttacgacgagagtcacctgatgcagccttttctattagatttgtcatcaagttactcaatgctttcttgtactg |
47764834 |
T |
|
| Q |
368 |
atccgcatcacttgcattgctatctaaaaacaaatatcgtgtagttgaagtttttaagagcccaaaaattaagctattcgagtaccataaagtgaaatca |
467 |
Q |
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||| || ||||||||||| || ||||||| ||||||| |||||| ||||||||| ||||||||||||||| ||| |||| ||||||| |||||||||||| |
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| T |
47764833 |
atctgcgtcacttgcattcctttctaaaaccaaatatagtgtaggtgaagttttcaagagcccaaaaattgagcgattcaagtaccacaaagtgaaatca |
47764734 |
T |
|
| Q |
468 |
ccaccccacacaattgcctctttttgatttggacactgctctct |
511 |
Q |
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| T |
47764733 |
ccaccccacacaatcgcctctttttgatttggacattgttctct |
47764690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 47761411 - 47761344
Alignment:
| Q |
256 |
caaaatttgcaggatcatacacactatctgcatcatacttacgacgagagtcacctgatgcagctttg |
323 |
Q |
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|||||||| ||||||| || || ||||||| |||||||||| ||||||||| |||||||||||||| |
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| T |
47761411 |
caaaatttataggatcaaactcattatctgcttcatacttactgcgagagtcaactgatgcagctttg |
47761344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 504
Target Start/End: Original strand, 27371618 - 27371673
Alignment:
| Q |
449 |
gtaccataaagtgaaatcaccaccccacacaattgcctctttttgatttggacact |
504 |
Q |
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| T |
27371618 |
gtaccttaaagtgacatcatcaccccacaaaatggcctctttttgatttggacact |
27371673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 27371244 - 27371305
Alignment:
| Q |
84 |
gaattgaagaagcgataaggatcaaatctaagacgacaacttggtttaagaacatttcctcc |
145 |
Q |
| |
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|||||| |||||||||||| ||||||||| | |||||||||||||||| ||| | |||||| |
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| T |
27371244 |
gaattgtagaagcgataagtatcaaatcttaagcgacaacttggtttaacaacttctcctcc |
27371305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 27371444 - 27371504
Alignment:
| Q |
275 |
cacactatctgcatcatacttacgacgagagtcacctgatgcagctttggccgttagattt |
335 |
Q |
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| T |
27371444 |
cacaccatctgcctcatatttgcgacgagagtcgccagatgcagctttgtctgttagattt |
27371504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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