View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_2 (Length: 754)
Name: NF9282_low_2
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 672; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 16 - 735
Target Start/End: Original strand, 27207624 - 27208343
Alignment:
| Q |
16 |
gacatcacccctccatcttttctccatcaaatccatcgcttgactcatcaacccacattcacaatacccatcaatcaaggtgttcaaaccaataacatct |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27207624 |
gacatcacccctccatcttttctccatcaaatccatcgcttgactcatcaacccacattcacaatacccatcaatcaaggtgttcaaaccaataacatct |
27207723 |
T |
|
| Q |
116 |
ttagtaaccccaccatcaaccaagttgtacataacccactcagcataccgaacaaatccaattctgcaataacccttaactagtatattacaagtgattg |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27207724 |
ttagtaaccccaccatcaaccaagttgtacataacccactcagcataccgaacaaatccaattctgcaataacccttaactagtatattacaagtgattg |
27207823 |
T |
|
| Q |
216 |
aatcaacacataaacctcttttaaccatttcagacaacagaccaaaaccctgatcaaccaaccctttctgacagaatccccatataacagtattatatgt |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27207824 |
aatcaacacataaacctcttttaaccatttcagacaacagaccaaaaccctgatcaaccaaccctttctgacagaatccccatataacagtattatatgt |
27207923 |
T |
|
| Q |
316 |
aacattatcaataacatcattgttcctaagatatcctaaagccaaatccaaatcaccaactttacacaacgaatgaaccaaaacattaacactgaaaaca |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27207924 |
aacattatcaataacatcattgttcctaagatatcctaaagccaaatctaaatcaccaactttacacaacgaatgaaccaaaacattaacactgaaaaca |
27208023 |
T |
|
| Q |
416 |
tcaggcacaaccccacaaaacaccatatcagaatacataacttttacctgagaaaccaaaccagaggcattgaattcagacaaaagctttttccagaaat |
515 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27208024 |
tcaggcacaaccccacaaaacaccatatcagaatacataacctttacctgagaaaccaaaccagaggcattgaattcagacaaaaggtttttccagaaat |
27208123 |
T |
|
| Q |
516 |
gtaaagagggaacaataccaagggcacgcatgcgagagaaagtataagaggcggtggagtatctgctacatttcaagtagagactaataagggtgtagaa |
615 |
Q |
| |
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||||||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| || |||||||| |
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|
| T |
27208124 |
gtaaagagggaacaaaatcaaaggcacgcatgcgagagaaagtatcagaggcggtggagaatctgccacatttcaagtagagactaatgagagtgtagaa |
27208223 |
T |
|
| Q |
616 |
gaatgaaacatagagatgggttttggtgggtgggatcaaaatcggatctttatggagttgggaggagaattttgtgatgggtgtagggtggaaggttctt |
715 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27208224 |
gaatgaaacatagagatgggttttggtgggtgggatcaaaatcggatctttatggagttgggaggagaattttgtgatgggtgtagagtggaaggttctt |
27208323 |
T |
|
| Q |
716 |
gtgactctggtggatgagag |
735 |
Q |
| |
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|||||||||||||||||||| |
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| T |
27208324 |
gtgactctggtggatgagag |
27208343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 36985070 - 36985003
Alignment:
| Q |
360 |
aatccaaatcaccaactttacacaacgaatgaaccaaaacattaacactgaaaacatcaggcacaacc |
427 |
Q |
| |
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|||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||| | |||||| |
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|
| T |
36985070 |
aatcaaaatcactaactttacacaaccaatgaactaaaacattaacactaaaaacatcatgtacaacc |
36985003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 704
Target Start/End: Original strand, 35612062 - 35612759
Alignment:
| Q |
16 |
gacatcacccctccatcttttctccatcaaatccatcgcttgactcatcaacccacattcacaatacccatcaatcaaggtgttcaaaccaataacatct |
115 |
Q |
| |
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|||||||| |||||| || ||||| ||||| ||| | |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35612062 |
gacatcactcctccagctattctcaatcaactccgttgcttgactcatcaaaccagcttcacaatacccatcaatcaaggtattcaaaccaataacatct |
35612161 |
T |
|
| Q |
116 |
ttagtaaccccaccatcaaccaagttgtacataacccactcagcataccgaacaaatccaattctgcaataacccttaactagtatattacaagtgattg |
215 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35612162 |
tttgtaaccccaccatcaaccaagttgtacataacccactcagcgtattgaaccaatccaattctgcaataacccttgactagtatattacaagtgattg |
35612261 |
T |
|
| Q |
216 |
aatcaacacataaacctcttttaaccatttcagacaacagaccaaaaccctgatcaaccaaccctttctgacagaatccccatataacagtattatatgt |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35612262 |
aatcaaaacataaacctcttttaaccatttcagacaacagaccaaaaccctgatcaaccaaccctttctgacagaatccccaaataacagtattatatgt |
35612361 |
T |
|
| Q |
316 |
aacattatcaat------aacatcattgttcctaagatatcctaaagccaaatccaaatcaccaactttacacaacgaatgaaccaaaacattaacactg |
409 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35612362 |
aacattatcaatatcaacaacatcgttgttcctaagatatcctaaagccaaatccaaatcaccaactttacacaacgaatgaaccaaaacattaacactg |
35612461 |
T |
|
| Q |
410 |
aaaacatcaggcacaaccccacaaaacaccatatcagaatacataacttttacctgagaaaccaaaccagaggcattgaattcagacaaaagctttttcc |
509 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| | |||| |
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| T |
35612462 |
aaaacatcaggtacaactccacaaaacagcatatcagaatacataagttttacctgagaaaccaaaccagaggcattgaattgatacaaaagggtattcc |
35612561 |
T |
|
| Q |
510 |
agaaatgtaaagagggaacaataccaagggcacgcatgcgagagaaagtataagaggcggtggagtatctgctacatttcaagtagagactaataagggt |
609 |
Q |
| |
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||||| |||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||| ||||| | | |||||||||| | ||| ||||| |
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| T |
35612562 |
agaaaggtaaagtaggaacaagaccaagagcacgcatgtgagagaaagtggcagaggcggtggagaatctgtcatgtgtcaagtagaggcgaatgagggt |
35612661 |
T |
|
| Q |
610 |
gtagaagaatgaaacatagagatgggttttggtgggtgggatcaaaatcggatctttatggagttgggaggagaa---ttttgtgatgggtgtagggt |
704 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| | |||||||||||||||||| |
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|
| T |
35612662 |
gcagaagaatgaaacatagagatgggttttggtgggtgggataaaaattgaatctttatggatttgggaggagaatgttcttgtgatgggtgtagggt |
35612759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 40842892 - 40842842
Alignment:
| Q |
377 |
ttacacaacgaatgaaccaaaacattaacactgaaaacatcaggcacaacc |
427 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||||||| | |||||| |
|
|
| T |
40842892 |
ttacacaaccaatgaactaaaacattaacactaaaaacatcatgtacaacc |
40842842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 31377448 - 31377381
Alignment:
| Q |
360 |
aatccaaatcaccaactttacacaacgaatgaaccaaaacattaacactgaaaacatcaggcacaacc |
427 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||| | |||||| |
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|
| T |
31377448 |
aatcaaaatcactaactttacacaaccaatgaactaaaacattaacactaaaaacatcatgtacaacc |
31377381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 43601189 - 43601256
Alignment:
| Q |
360 |
aatccaaatcaccaactttacacaacgaatgaaccaaaacattaacactgaaaacatcaggcacaacc |
427 |
Q |
| |
|
|||| ||||||| ||||||||||||| ||||||| |||||||||||||| |||| |||| | |||||| |
|
|
| T |
43601189 |
aatcaaaatcactaactttacacaaccaatgaactaaaacattaacactaaaaatatcatgtacaacc |
43601256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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