View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_22 (Length: 450)
Name: NF9282_low_22
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 35256625 - 35257058
Alignment:
| Q |
1 |
tagattcagttggccttcaggcgctacatatgaaggcgaattcaagactggtttcatggatggtgtaggaacatacacgggtattaatggtgagacatat |
100 |
Q |
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| T |
35256625 |
tagattcagttggccttcaggcgctacatatgaaggcgaattcaagactggtttcatggatggtgtaggaacatacacgggtattaatggtgagacatat |
35256724 |
T |
|
| Q |
101 |
aagggacaatgggtgatgaatttaaaacatggtcatgggtataagagttatgtgaatggtgattggtatgaaggtgattggaggagaggggtgcaagatg |
200 |
Q |
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| T |
35256725 |
aaaggacaatgggtgatgaatttaaaacatggtcatgggtataagagttatgtgaatggtgattggtatgaaggtgattggaggagaggggtgcaagatg |
35256824 |
T |
|
| Q |
201 |
gaaaagggaggtatgaatggagagatatgagtcattatattggtgaatggaagaatgggataatttggggtaaagggtcannnnnnnggcctaatggtaa |
300 |
Q |
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| T |
35256825 |
gaaaagggaggtatgaatggagagatatgagtcattatattggtgaatggaagaatgggataatttggggtaaaggatcatttttttggcctaatggtaa |
35256924 |
T |
|
| Q |
301 |
tagctttgaagggatttgggaagatggtttgccaaaaggaaatgggacttttagatggcaagatggaagttattatgttgggaactttagtaaggatgat |
400 |
Q |
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| T |
35256925 |
tagctttgaagggatttgggaagatggtttgccaaaaggaaatggaacttttagatggcaagatggaagttattatgttgggaactttagtaaggatgat |
35257024 |
T |
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| Q |
401 |
gatgataataataaagatgaaaatggaaaatttt |
434 |
Q |
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| T |
35257025 |
gatgataataataaagatgaaaatgggaaatttt |
35257058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 29 - 378
Target Start/End: Complemental strand, 19643083 - 19642734
Alignment:
| Q |
29 |
tatgaaggcgaattcaagactggtttcatggatggtgtaggaacatacacgggtattaatggtgagacatataagggacaatgggtgatgaatttaaaac |
128 |
Q |
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|||||||| || ||||||| ||||| |||||||| |||| ||||||| || |||||| || || ||||| |||||||||||||||||||| |||| |
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| T |
19643083 |
tatgaaggggagttcaagagtggttatatggatggaataggtgcatacacttctactaatggggatacttataaaggacaatgggtgatgaatttgaaac |
19642984 |
T |
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| Q |
129 |
atggtcatgggtataagagttatgtgaatggtgattggtatgaaggtgattggaggagaggggtgcaagatggaaaagggaggtatgaatggagagatat |
228 |
Q |
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| T |
19642983 |
atggtcatggtgagacgagttattcgaatggagataagtatgagggagaatggagaagaggtttgcaggatggacaagggagatatgagtggaaagatga |
19642884 |
T |
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| Q |
229 |
gagtcattatattggtgaatggaagaatgggataatttggggtaaagggtcannnnnnnggcctaatggtaatagctttgaagggatttgggaagatggt |
328 |
Q |
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| T |
19642883 |
gaaatattatattggggaatggaggaatgggagtatttggggtaaagggtcatttgtttggagtaatgggaataggtatgatggctattgggaagatggt |
19642784 |
T |
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| Q |
329 |
ttgccaaaaggaaatgggacttttagatggcaagatggaagttattatgt |
378 |
Q |
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||||| ||||| ||||| ||||| | |||| |||||||||| |||||| |
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| T |
19642783 |
ttgcctaaagggaatggaactttcaaatggggtgatggaagtttttatgt |
19642734 |
T |
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