View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_24 (Length: 440)
Name: NF9282_low_24
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 354
Target Start/End: Complemental strand, 34466385 - 34466046
Alignment:
| Q |
15 |
atcattaccatcccatttcaaaccaaaatcttccatcggcataggagaacaagattcagaagaaaaagatggtgaaacagggtttataggaggaaaagat |
114 |
Q |
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| T |
34466385 |
atcattaccatcccatttcaaaccaaaatcttccatcggcataggagaacaagattcagaagaaaaagatggtgaaacagggtttataggaggaaaagat |
34466286 |
T |
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| Q |
115 |
tgcacactttcaatagggctaagattaagtgaaggagaacgtgagagagagtaggaaagagggtatgaagcagttcttgaagtaaagcttttactaccaa |
214 |
Q |
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| T |
34466285 |
tgcacactttcaatagggctaagattaagtgaaggagaacgtgagagagagtaggaaagagggtatgaagcagttcttgaagtaaagcttttactaccaa |
34466186 |
T |
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| Q |
215 |
atttatcatagtgaaaaacgttgaaggaacgtgagcttgtagcagcaacagcaactgtgacaaccggggaagaagaaggagaaagagaaggactgtgttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34466185 |
atttatcatagtgaaaaacgttgaaggaacgtgagcttgtagcagcaacagcaactgtgacaaccggggaagaagaaggagaaagagaaggactgtgttg |
34466086 |
T |
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| Q |
315 |
ttgtttgttcccagaaggagaacctttcggtgaataaaac |
354 |
Q |
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| T |
34466085 |
ttgtttgttcccagaaggagaacctttcggtgaataaaac |
34466046 |
T |
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