View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_25 (Length: 411)
Name: NF9282_low_25
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 7822505 - 7822303
Alignment:
| Q |
1 |
gaaaaaagctcctaaagaatcatttctaaaatgattaagcaatgcttctaaaggagaaacactaattaatatatcattgtttaaagaagcttcaagtttc |
100 |
Q |
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| T |
7822505 |
gaaaaaagctcctaaaaaatcatttctaaaatgattaagcaatgcttctaaaggagaaatacgaattaatagatcgttgtttaaagaaacttcaagttta |
7822406 |
T |
|
| Q |
101 |
accaaaaagtctacacaccgattctattctcttctctaagaatgtgagaagcagaaacatctcttttatggcttgactaagcacttcatgttgataactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7822405 |
accaaaaagtctacacaccgattctattctcttctctaagaatgtgagaagcagaaacatctcttttatggcttgactaagcacttcatgttgataactt |
7822306 |
T |
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| Q |
201 |
ttt |
203 |
Q |
| |
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||| |
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| T |
7822305 |
ttt |
7822303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 233 - 390
Target Start/End: Complemental strand, 7822302 - 7822137
Alignment:
| Q |
233 |
tttgacgtgatattggtacttgacaatgggacagttgatagattgatgcaaagaagtaaatcagaatagcaaacaaactcattgatacccatattcttga |
332 |
Q |
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|||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7822302 |
tttgacgtgacattggtacttcacaacgggacagttgatagattgatgcaaagaagtaaatcagaatagcaaacaaactcattgatacccatattcttga |
7822203 |
T |
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| Q |
333 |
ataatatcat--accgtggtaac------ttgtaaacaactcaacaagcataatatcagaagaacc |
390 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7822202 |
ataatatcatacaccgtggtaacttgtaattgtaaacaactcaacaagcataatatcagaagaacc |
7822137 |
T |
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