View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_27 (Length: 404)
Name: NF9282_low_27
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 191 - 323
Target Start/End: Original strand, 7275634 - 7275766
Alignment:
| Q |
191 |
aatcccacgacccgcgaactctctgcatcaatctctgactttgaaatttcattggtctcaatctctctacaaaccctaaaataaatttgtaagtgtatcg |
290 |
Q |
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|||||| ||||| | ||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7275634 |
aatcccgcgaccggagaactctctgcatcagtttctgactctgatttttcattggtctcaatctctctacaaaccctaaaataaaattgtaagtgtatct |
7275733 |
T |
|
| Q |
291 |
taatctgattcttcatttgttagtaagtaatga |
323 |
Q |
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| T |
7275734 |
taatctgattcttcatttgttagtaagtaatga |
7275766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 207 - 338
Target Start/End: Complemental strand, 3801338 - 3801207
Alignment:
| Q |
207 |
aactctctgcatcaatctctgactttgaaatttcattggtctcaatctctctacaaaccctaaaataaatttgtaagtgtatcgtaatctgattcttcat |
306 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |
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| T |
3801338 |
aactctctgcatcaatctctgactttgatttttcattggtctcaatctctctacaaaccctaaaataaaattgtaagtgtattttaatttgattcttcat |
3801239 |
T |
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| Q |
307 |
ttgttagtaagtaatgatagtgcttcaatgtc |
338 |
Q |
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| T |
3801238 |
gcgttagtaagtaatgatattgtttcaatgtc |
3801207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 4201685 - 4201731
Alignment:
| Q |
2 |
tagagcatgatacaaacatcaaagcgaaagacgagtaaatgatacct |
48 |
Q |
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| T |
4201685 |
tagagcgtgatacaaacatcaaagcgaaagacaagtaaatgacacct |
4201731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 36620004 - 36619942
Alignment:
| Q |
209 |
ctctctgcatcaatctctgactttgaaatttcattggtctcaatctctctacaaaccctaaaa |
271 |
Q |
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||||||| ||| ||||||||| |||| |||||| ||||||||||||| ||||||||||||| |
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| T |
36620004 |
ctctctgtatcgttctctgactctgaatcttcatttgtctcaatctctccacaaaccctaaaa |
36619942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 29522344 - 29522311
Alignment:
| Q |
238 |
ttcattggtctcaatctctctacaaaccctaaaa |
271 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
29522344 |
ttcattgatctcaatctctctacaaaccctaaaa |
29522311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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