View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_31 (Length: 393)
Name: NF9282_low_31
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 190 - 374
Target Start/End: Complemental strand, 38225416 - 38225231
Alignment:
| Q |
190 |
aaaatctcacaaagtagtgctagctagtggcgatgattcggcttctactagttgcaagcaacctaaccta-caggacggtagcatctgatatggacacaa |
288 |
Q |
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| T |
38225416 |
aaaatctcacaaagtagtgctagctagtggcgatgattcggcttctactagttgcaagcaacctaacctaacaggacggtggcatctgatatggacacaa |
38225317 |
T |
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| Q |
289 |
aagacaccaagtaacaagcatttcaactatcacatgctttatgatgataacaatgatgctatatagttatattccatcacagttta |
374 |
Q |
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| T |
38225316 |
aagacaccaagtaacaagcatttcaactatcacatgctttatgatgataacaatgatgctatatagttatattccatcacagttta |
38225231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 38225607 - 38225496
Alignment:
| Q |
1 |
tacataaaatatttttatatcttatgcatggaaatgtatgaaagaagatacaattttattaaaacaaaaatatcaatttttatattctctccttacaaaa |
100 |
Q |
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| T |
38225607 |
tacataaaatatttttatatcctatgcatggaaatgtatgaaagaagatacaattttattaaaacaaaaatattaatttttattttctctcctaacaaaa |
38225508 |
T |
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| Q |
101 |
ataaatataaca |
112 |
Q |
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| T |
38225507 |
ataaatataaca |
38225496 |
T |
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