View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_34 (Length: 378)
Name: NF9282_low_34
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 53688930 - 53689239
Alignment:
| Q |
17 |
attttttggtcaagaaattctccgttcccaaaacaaaacgaaagaaaaatgggtgttcaatgggatgagttaccgcaagaaatcatagaatcaatctcga |
116 |
Q |
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| T |
53688930 |
attttttggtcaagaaattctccgttcccaaaacaaaacgaaagaaaaatgggtgttcaatgggatgagttaccgcaagaaatcatagaatcaatctcga |
53689029 |
T |
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| Q |
117 |
aaaggttaacaatctacgccgactatatccgattccaatgtgggtgccgcacctggaattcctccgtccctaatggagaatactaggcactggcgtaccg |
216 |
Q |
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| T |
53689030 |
aaaggttaacaatctacgccgactatatccgattccaatgtgggtgccgcacctggaattcctccgtccctaatggagaatactaggcactggcgtacca |
53689129 |
T |
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| Q |
217 |
catcatctctattgtaataatttcttttacttgcagaaaaagaagtcccttcaaacttattcggtatttcttttttaattgaaattaggaaaggagattg |
316 |
Q |
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| T |
53689130 |
catcatctctattgtaataatttcttttacttgcagaaaaagaagtcccttcaaacttattcagtatttcttttttaattgaaattaggaaaggagattg |
53689229 |
T |
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| Q |
317 |
aaaacataat |
326 |
Q |
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| T |
53689230 |
aaaacttaat |
53689239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 53696012 - 53696164
Alignment:
| Q |
37 |
tccgttcccaaaacaaaacgaaagaaaaatgggtgttcaatgggatgagttaccgcaagaaatcatagaatcaatctcgaaaaggttaacaatctacgcc |
136 |
Q |
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| T |
53696012 |
tccgttcccaaaacaaaaccaaagaaaaatgggtgttgaatgggctgagttaccgcaagaaatcatagaatcaatctcgaaaaggttaacaatctacgcc |
53696111 |
T |
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| Q |
137 |
gactatatccgattccaatgtgggtgccgcacctggaattcctccgtccctaa |
189 |
Q |
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| T |
53696112 |
gactatattcgattccgatgtgtctgtcgcacctggaattcctctgtccctaa |
53696164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 53693258 - 53693299
Alignment:
| Q |
326 |
taataatctaaacatagctaattgaaatatactagtataatc |
367 |
Q |
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| T |
53693258 |
taataatctaaacatagctaattgaaatatactagtgtaatc |
53693299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 53705223 - 53705165
Alignment:
| Q |
94 |
agaaatcatagaatcaatctcgaaaaggttaacaatctacgccgactatatccgattcc |
152 |
Q |
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| T |
53705223 |
agaaatcatacaaacaatctcacaaaagttaacaatctacgccgattacatccgattcc |
53705165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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