View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_36 (Length: 370)
Name: NF9282_low_36
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 32 - 355
Target Start/End: Original strand, 7622220 - 7622543
Alignment:
| Q |
32 |
atgatggtgcagaacaatgatggtgtatctggcaatagtaatattttcttaccgtttggaggaggaccaagattatgcgcaggatcagaattagcaaagc |
131 |
Q |
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| T |
7622220 |
atgatggtgcagaacaatgatggtgcatctggcaatagtaatattttcttaccgtttggaggaggaccaagattatgcgcaggatcagaattagcaaagc |
7622319 |
T |
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| Q |
132 |
ttgaaatggctgttttcattcaccatctcatcctcaactacaattgggaattgactgataataacgatcaagcttttgcatatccttttgttgattttcc |
231 |
Q |
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| T |
7622320 |
ttgaaatggctgttttcattcaccatctcattctcaactacaattgggaattgactgataataacgatcaagcttttgcatatccttttgttgattttcc |
7622419 |
T |
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| Q |
232 |
taaaggcctacaaattagagtccaagctcactctctaatatgatcatatcatcaattaaaagtccaattagttaggtcatttattctataactaagaaaa |
331 |
Q |
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| T |
7622420 |
taaaggcctacaaattagagtccaagctcactctctaatatgatcatatcatcaattaaaagtccaattagttaggtcatccattctataactaagaaaa |
7622519 |
T |
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| Q |
332 |
agaccacatgctatgctacctact |
355 |
Q |
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|||||||||||||||||||||||| |
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| T |
7622520 |
agaccacatgctatgctacctact |
7622543 |
T |
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Back To:
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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 33101636 - 33101542
Alignment:
| Q |
86 |
tttggaggaggaccaagattatgcgcaggatcagaattagcaaagcttgaaatggctgttttcattcaccatctcatcctcaactacaattggga |
180 |
Q |
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| T |
33101636 |
tttggaggaggaccaaggctatgtgcaggattagaattagccaaacttgaaatggctgttttcattcaccatatcatcctcaaatacaactggga |
33101542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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