View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_40 (Length: 348)
Name: NF9282_low_40
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 35674613 - 35674733
Alignment:
| Q |
14 |
ctttctttatgcagctagtatgccatgtcgccataaacaaccacataagtggtctttgacggaattagatagcggcaatttaagactnnnnnnnctccag |
113 |
Q |
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| T |
35674613 |
ctttctttacgcagctagcatgccatgtcgccataaacaaccacataagtggtctttgacggaattagatagcggcaatttaaaactaaaaaaacttcgg |
35674712 |
T |
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| Q |
114 |
ttgtaatgtgcttgattgtaa |
134 |
Q |
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| T |
35674713 |
ttgtaatgtgcttgattgtaa |
35674733 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 335
Target Start/End: Original strand, 35655009 - 35655043
Alignment:
| Q |
301 |
atgtgacctttcacattttgatcaacaatcactct |
335 |
Q |
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| T |
35655009 |
atgtgacctttcacattttaatcaacaatcactct |
35655043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 8342747 - 8342783
Alignment:
| Q |
170 |
ttcaataccattaaagtttatcttgccttgttctgtt |
206 |
Q |
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| T |
8342747 |
ttcaataccataaaagtttatcttgcgttgttctgtt |
8342783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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