View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9282_low_44 (Length: 330)

Name: NF9282_low_44
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9282_low_44
NF9282_low_44
[»] chr7 (4 HSPs)
chr7 (13-205)||(34708155-34708347)
chr7 (214-313)||(34707985-34708084)
chr7 (249-283)||(32794481-32794515)
chr7 (208-240)||(34708085-34708117)
[»] chr1 (3 HSPs)
chr1 (30-114)||(46948331-46948415)
chr1 (233-280)||(25038283-25038330)
chr1 (233-280)||(25043495-25043542)
[»] chr8 (3 HSPs)
chr8 (30-114)||(39568892-39568976)
chr8 (233-304)||(5965092-5965163)
chr8 (233-283)||(41122467-41122517)
[»] chr4 (1 HSPs)
chr4 (2-132)||(18912072-18912198)
[»] chr5 (2 HSPs)
chr5 (233-280)||(9537776-9537823)
chr5 (235-281)||(9537443-9537489)
[»] chr6 (2 HSPs)
chr6 (233-279)||(31239111-31239157)
chr6 (233-269)||(31248489-31248525)
[»] chr2 (1 HSPs)
chr2 (244-286)||(7412432-7412474)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 34708347 - 34708155
Alignment:
Q  13 caaaacaatttttaatcgctacagtaaaatagatccaaactatggaagttcggatttcaagaaagtttatgtcctcatagttatctttccctttactttc 112  Q
    ||||||||| |||  |||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||| || |||||||||||||||||||    
T  34708347 caaaacaatctttcctcgctacagtgaaatagatccaaattatggaagttcgaatttcaagaaagtttttgtcctcaaagctatctttccctttactttc 34708248  T
Q  113 ttcagatccaaccataccctaagtattcgaagaaattggttttcggtagtgatggtatatacatcaatattctctatggctgacctttatata 205  Q
    ||||| |||||| ||||| ||||||||| ||| ||||||| || | |||||||||||||||| | ||||||||||||||||||||||||||||    
T  34708247 ttcagttccaacaataccttaagtattcaaaggaattggtatttgatagtgatggtatatacgtgaatattctctatggctgacctttatata 34708155  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 34708084 - 34707985
Alignment:
Q  214 atgatattattttgacattatgtcttattactgttagtaggtagcattctgttaaactaacaacttgtcaatgaccatagcaagagtacattgtactgtt 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||    
T  34708084 atgaaattattttgacattatgtcttattactgttagtaggtagcattctgttaaactaacaacttgccagtgaccataacaagagtacattgcactgtt 34707985  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 283
Target Start/End: Original strand, 32794481 - 32794515
Alignment:
Q  249 agtaggtagcattctgttaaactaacaacttgtca 283  Q
    |||||||||||||||||||||||||||||||||||    
T  32794481 agtaggtagcattctgttaaactaacaacttgtca 32794515  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 34708117 - 34708085
Alignment:
Q  208 tcaattatgatattattttgacattatgtctta 240  Q
    |||||||||| ||||||||||||||||||||||    
T  34708117 tcaattatgaaattattttgacattatgtctta 34708085  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 46948415 - 46948331
Alignment:
Q  30 gctacagtaaaatagatccaaactatggaagttcggatttcaagaaagtttatgtcctcatagttatctttccctttactttctt 114  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||| ||| |||||||||   ||||||||||| |||||||||    
T  46948415 gctatagtaaaatagatccaaactatggaagcccggatttcaagaaattttctgtcctcatgactatctttccctatactttctt 46948331  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 25038330 - 25038283
Alignment:
Q  233 atgtcttattactgttagtaggtagcattctgttaaactaacaacttg 280  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  25038330 atgtcttattgttgttagtaggtagcattctgttaaactaacaacttg 25038283  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 25043542 - 25043495
Alignment:
Q  233 atgtcttattactgttagtaggtagcattctgttaaactaacaacttg 280  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  25043542 atgtcttattgttgttagtaggtagcattctgttaaactaacaacttg 25043495  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 39568892 - 39568976
Alignment:
Q  30 gctacagtaaaatagatccaaactatggaagttcggatttcaagaaagtttatgtcctcatagttatctttccctttactttctt 114  Q
    ||||||| |||||| ||||||||||||||||  || ||||||||||| ||| | ||||||||| ||||||||||| |||||||||    
T  39568892 gctacaggaaaatatatccaaactatggaagcccgaatttcaagaaactttctatcctcatagctatctttccctatactttctt 39568976  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 5965092 - 5965163
Alignment:
Q  233 atgtcttattactgttagtaggtagcattctgttaaactaacaacttgtcaatgaccatagcaagagtacat 304  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||  |||| |||  |||||||||    
T  5965092 atgtcttattaatgttagtaggtagcattatgttaaactaacaacttgtcagggaccttagtgagagtacat 5965163  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 41122467 - 41122517
Alignment:
Q  233 atgtcttattactgttagtaggtagcattctgttaaactaacaacttgtca 283  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  41122467 atgtcttattgctgtcagtaggtagcattctgttaaactaacaacttgtca 41122517  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 18912072 - 18912198
Alignment:
Q  2 tggacctcattcaaaacaatttttaatcgctacagtaaaatagatccaaactatggaagttcggatttcaagaaagtttatgtcctcatagttatctttc 101  Q
    |||||| ||| ||||||||| |||  | ||||| |||||||| |||||||||||| |||  || ||||||||||| ||| |||||| |    ||||||||    
T  18912072 tggaccccatccaaaacaatatttctttgctacggtaaaatacatccaaactatgaaagcccgaatttcaagaaactttctgtcctta----tatctttc 18912167  T
Q  102 cctttactttcttcagatccaaccataccct 132  Q
    ||||||||||||||   ||||| ||||||||    
T  18912168 cctttactttcttctcttccaaacataccct 18912198  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 9537776 - 9537823
Alignment:
Q  233 atgtcttattactgttagtaggtagcattctgttaaactaacaacttg 280  Q
    |||||||||| |||| |||||||||||||||| |||||||||||||||    
T  9537776 atgtcttattgctgtcagtaggtagcattctggtaaactaacaacttg 9537823  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 9537489 - 9537443
Alignment:
Q  235 gtcttattactgttagtaggtagcattctgttaaactaacaacttgt 281  Q
    |||||||| |||| |||| |||||||| |||||||||||||||||||    
T  9537489 gtcttattgctgtcagtatgtagcattttgttaaactaacaacttgt 9537443  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 31239157 - 31239111
Alignment:
Q  233 atgtcttattactgttagtaggtagcattctgttaaactaacaactt 279  Q
    |||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  31239157 atgtcttattgctgtcagtaggtagtattctgttaaaataacaactt 31239111  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 31248525 - 31248489
Alignment:
Q  233 atgtcttattactgttagtaggtagcattctgttaaa 269  Q
    |||||||||| |||| |||||||||||||||||||||    
T  31248525 atgtcttattgctgtcagtaggtagcattctgttaaa 31248489  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 7412432 - 7412474
Alignment:
Q  244 ctgttagtaggtagcattctgttaaactaacaacttgtcaatg 286  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||    
T  7412432 ctgtcagtaggtagcattctgttaaattaacaacttatcaatg 7412474  T

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