View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9282_low_48 (Length: 323)

Name: NF9282_low_48
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9282_low_48
NF9282_low_48
[»] chr2 (23 HSPs)
chr2 (62-309)||(8572652-8572898)
chr2 (87-299)||(9316784-9316999)
chr2 (123-290)||(9292699-9292866)
chr2 (136-290)||(10372653-10372807)
chr2 (81-242)||(9329418-9329579)
chr2 (86-290)||(9321762-9321966)
chr2 (86-290)||(9060272-9060479)
chr2 (109-241)||(12018111-12018243)
chr2 (94-252)||(12005347-12005505)
chr2 (95-241)||(12011776-12011922)
chr2 (127-292)||(10353914-10354079)
chr2 (132-244)||(10348620-10348732)
chr2 (132-251)||(10336621-10336740)
chr2 (88-251)||(7114824-7114984)
chr2 (132-251)||(9275333-9275452)
chr2 (165-293)||(14551088-14551215)
chr2 (110-250)||(9283372-9283512)
chr2 (143-242)||(9357935-9358034)
chr2 (110-234)||(17565312-17565436)
chr2 (162-241)||(9365415-9365494)
chr2 (94-237)||(11986707-11986850)
chr2 (127-241)||(7612716-7612830)
chr2 (139-241)||(8578752-8578854)
[»] scaffold0667 (1 HSPs)
scaffold0667 (81-307)||(5213-5439)
[»] chr3 (2 HSPs)
chr3 (91-290)||(37463293-37463492)
chr3 (127-223)||(39428717-39428812)
[»] chr4 (2 HSPs)
chr4 (127-290)||(26575650-26575813)
chr4 (165-251)||(561980-562066)
[»] chr8 (1 HSPs)
chr8 (130-308)||(41965940-41966118)
[»] chr1 (4 HSPs)
chr1 (148-293)||(29467061-29467206)
chr1 (148-270)||(29452587-29452709)
chr1 (148-293)||(29423982-29424127)
chr1 (165-295)||(29442612-29442742)
[»] chr5 (1 HSPs)
chr5 (127-240)||(36225571-36225684)
[»] chr7 (1 HSPs)
chr7 (148-241)||(45238749-45238842)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 62 - 309
Target Start/End: Original strand, 8572652 - 8572898
Alignment:
Q  62 taaacccaaaaagtgaaacccttacttccttccaatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatca 161  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  8572652 taaacccaaaaagtgaaacccttccttccttccaatggcgggtgatgttcttccgtcggaaatagtcactgaaatcttctcccgcataccagtaaa-tca 8572750  T
Q  162 cttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaa 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8572751 cttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaa 8572850  T
Q  262 tcattcgacgcaaatacgatatctaccaaatcgatgatgatttctctg 309  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8572851 tcattcgacgcaactacgatatctaccaaatcgatgatgatttctctg 8572898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 299
Target Start/End: Complemental strand, 9316999 - 9316784
Alignment:
Q  87 ttccttccaatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaa 186  Q
    |||||||||||||||| ||| | ||||||| |||| ||| || | ||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  9316999 ttccttccaatggcggctgacggtcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaa 9316900  T
Q  187 aatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaa---aattccctcaatcgttccttaatcattcgacgcaaatacgatat 283  Q
    |||||||||||||| |||| ||||| |||||||||| ||||||||||||||||   |||||||||||||| ||||||||| |||    ||||| |||  |    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaact 9316800  T
Q  284 ctaccaaatcgatgat 299  Q
    ||||||||||||||||    
T  9316799 ctaccaaatcgatgat 9316784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 123 - 290
Target Start/End: Complemental strand, 9292866 - 9292699
Alignment:
Q  123 atagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttca 222  Q
    |||||| | ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||  |||||||||| |||| |||||    
T  9292866 atagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttca 9292767  T
Q  223 ccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaaatacgatatctaccaa 290  Q
    | |||||||||||||||||||||||||| || ||||||||| |||||| ||||| |||| ||||||||    
T  9292766 ctaaccttcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaa 9292699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 136 - 290
Target Start/End: Complemental strand, 10372807 - 10372653
Alignment:
Q  136 tcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacct 235  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||| |||| ||||||||||||    
T  10372807 tcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacct 10372708  T
Q  236 caaaaattccctcaatcgttccttaatcattcgacgcaaatacgatatctaccaa 290  Q
    | |||||||||||||||| ||||||||| ||| |||||||| |||| ||||||||    
T  10372707 ccaaaattccctcaatcgatccttaatccttcaacgcaaattcgatctctaccaa 10372653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 9329579 - 9329418
Alignment:
Q  81 ccttacttccttccaatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaa 180  Q
    |||| ||||||||||||||||||||||||||||| | ||||  |  | || |||||| |||||||| |||| ||||||||||||||||||||||| ||||    
T  9329579 ccttccttccttccaatggcgggtgatgttcttctgccggaattgttaacggaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaa 9329480  T
Q  181 cttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaat 242  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  9329479 cttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 9321966 - 9321762
Alignment:
Q  86 cttccttccaatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttca 185  Q
    |||||||||||||||| ||||||||| |||| ||||  |  |    |||||| |||||||| |||| |||||||||||||||| |||||||||||||||     
T  9321966 cttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttct 9321867  T
Q  186 aaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaaatacgatatct 285  Q
    |||||||||||||| ||||||||||| ||| |||||| ||||||||| |||||||||||||||| ||| ||||||||||||| || ||||| |||| |||    
T  9321866 aaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctct 9321767  T
Q  286 accaa 290  Q
    |||||    
T  9321766 accaa 9321762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 9060272 - 9060479
Alignment:
Q  86 cttccttccaatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttca 185  Q
    ||||||||||||||||| ||||||||||||| |||| ||| |  | ||||||||||||||| |||| ||  |||||||||||||||||||||||||||||    
T  9060272 cttccttccaatggcggctgatgttcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttca 9060371  T
Q  186 aaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaa---aattccctcaatcgttccttaatcattcgacgcaaatacgata 282  Q
    ||||||||||||||  |||||||||| ||||||||||| |||||| ||||||||   ||| |||||||||| |   ||||| |||||| ||||| ||||     
T  9060372 aaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgatc 9060471  T
Q  283 tctaccaa 290  Q
    ||||||||    
T  9060472 tctaccaa 9060479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 12018111 - 12018243
Alignment:
Q  109 ttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcga 208  Q
    |||||||||| |||||| || | ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  12018111 ttcttccgtcagacatactcgccgaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcga 12018210  T
Q  209 ttcccacaacttcaccaaccttcacctcaaaaa 241  Q
    ||| |||||||||||||| ||||| ||||||||    
T  12018211 ttctcacaacttcaccaatcttcaactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 94 - 252
Target Start/End: Original strand, 12005347 - 12005505
Alignment:
Q  94 caatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcact 193  Q
    |||||||| ||||||||||||| || || ||| |||| ||||||||||||||| ||||   | ||||||||||||||||||| ||||||||| |||| ||    
T  12005347 caatggcgagtgatgttcttccttcagaaatactcaccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgct 12005446  T
Q  194 taaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatc 252  Q
    |||||| ||||||||||| |||||||||||||||||||| || |||||||| |||||||    
T  12005447 taaatccataatcgattctcacaacttcaccaaccttcatctaaaaaattctctcaatc 12005505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 95 - 241
Target Start/End: Original strand, 12011776 - 12011922
Alignment:
Q  95 aatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcactt 194  Q
    ||||||| ||||||||||||| || || ||| |||| ||||||||||||||| |||    | ||||||||||||||||||| ||||||||||||||||||    
T  12011776 aatggcgagtgatgttcttccttcagaaatactcaccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcactt 12011875  T
Q  195 aaatctataatcgattcccacaacttcaccaaccttcacctcaaaaa 241  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  12011876 aaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 127 - 292
Target Start/End: Complemental strand, 10354079 - 10353914
Alignment:
Q  127 tcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaa 226  Q
    |||| |||||| | |||||| |||| |||| |||||||||| ||||||||||||||||||||||| |||||||  ||||||||||| |||| |||| |||    
T  10354079 tcaccgaaatcctttcccgcttaccggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaa 10353980  T
Q  227 ccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaaatacgatatctaccaaat 292  Q
    ||||||||||| |||||||| |||||  ||||||||  |||||  ||||| |||||||||||||||    
T  10353979 ccttcacctcagaaattcccccaatcaatccttaattcttcgattcaaattcgatatctaccaaat 10353914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 10348732 - 10348620
Alignment:
Q  132 gaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttc 231  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||| ||| |||| ||||||||    
T  10348732 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttc 10348633  T
Q  232 acctcaaaaattc 244  Q
    |||| ||||||||    
T  10348632 acctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 10336740 - 10336621
Alignment:
Q  132 gaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttc 231  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||| ||||| |||| ||||||||    
T  10336740 gaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttc 10336641  T
Q  232 acctcaaaaattccctcaat 251  Q
    ||||  ||||||||||||||    
T  10336640 accttcaaaattccctcaat 10336621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 7114824 - 7114984
Alignment:
Q  88 tccttccaatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaa 187  Q
    ||||||||||||||| ||||   |||||| |||| ||| |  | ||||||||||| ||| ||||||||  ||||||||| ||||||||||||||||||||    
T  7114824 tccttccaatggcggctgat---cttccgccggaaatactatccgaaatcttctctcgcctaccagtacgatcacttcttcgattccgatcaacttcaaa 7114920  T
Q  188 atcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaat 251  Q
    ||||||||||||  |||||||||||||||| |||| ||||||||| || ||||||||| |||||    
T  7114921 atcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattccttcaat 7114984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 9275452 - 9275333
Alignment:
Q  132 gaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttc 231  Q
    ||||||||||||||  |||||||| ||||||||||| ||||||||||||  |||||||||||||||||  | || |||||||||||||||| ||||||||    
T  9275452 gaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttc 9275353  T
Q  232 acctcaaaaattccctcaat 251  Q
    | ||||||||||||||||||    
T  9275352 atctcaaaaattccctcaat 9275333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 14551215 - 14551088
Alignment:
Q  165 ctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatca 264  Q
    |||| ||||||||||||||||||||||||| ||||  ||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||||||     
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatcc 14551117  T
Q  265 ttcgacgcaaatacgatatctaccaaatc 293  Q
    |||||| ||| | | || |||||||||||    
T  14551116 ttcgacacaagtccaatctctaccaaatc 14551088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 250
Target Start/End: Original strand, 9283372 - 9283512
Alignment:
Q  110 tcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgat 209  Q
    ||||||| |||||||| |  | |||||||||||| || ||||||| |||||||| |||||||||||||||||||| |||||||||  |||  |||| |||    
T  9283372 tcttccgccggacatacttgccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagat 9283471  T
Q  210 tcccacaacttcaccaaccttcacctcaaaaattccctcaa 250  Q
    || ||||| |||| ||||||||||||||||| |||||||||    
T  9283472 tctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 9358034 - 9357935
Alignment:
Q  143 ccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaat 242  Q
    |||| |||||||||||||||||||||| ||  |||||||||||||||||||||||||  |||||||||| ||||||||||  ||||||||||||||||||    
T  9358034 ccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 17565312 - 17565436
Alignment:
Q  110 tcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgat 209  Q
    |||||| |||||  || ||||||||||| |||| ||| |||||||| |||| || |||||| |||||||||| || ||||||||||||| | |||| |||    
T  17565312 tcttccatcggaattattcactgaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgat 17565411  T
Q  210 tcccacaacttcaccaaccttcacc 234  Q
    ||||| |||||||||||||||||||    
T  17565412 tcccataacttcaccaaccttcacc 17565436  T

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Target: chr2; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 9365494 - 9365415
Alignment:
Q  162 cttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaa 241  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||| || ||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

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Target: chr2; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 11986707 - 11986850
Alignment:
Q  94 caatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcact 193  Q
    ||||||||||||||||||| ||   ||| ||  || | ||||||||||||||| |||    | ||||||||||||||||||| ||||||||| |||| ||    
T  11986707 caatggcgggtgatgttctcccaatggaaattatctccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgct 11986806  T
Q  194 taaatctataatcgattcccacaacttcaccaaccttcacctca 237  Q
    |||||| ||||| ||||| |||||||||||||| ||||||||||    
T  11986807 taaatccataattgattctcacaacttcaccaatcttcacctca 11986850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 7612830 - 7612716
Alignment:
Q  127 tcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaa 226  Q
    ||||||||||| |||| ||| |||| ||| || | || |||||||||||||||| ||| ||||| ||||||||  |||| ||||||||||||||||| ||    
T  7612830 tcactgaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaa 7612731  T
Q  227 ccttcacctcaaaaa 241  Q
    |||||||||||||||    
T  7612730 ccttcacctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 8578752 - 8578854
Alignment:
Q  139 tctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaa 238  Q
    |||||||| |||| ||| |||| ||||||||||||||||||| ||| |||||||||  |||  | || |||||||||| ||||||||| | | |||||||    
T  8578752 tctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacctcaa 8578851  T
Q  239 aaa 241  Q
    |||    
T  8578852 aaa 8578854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 81 - 307
Target Start/End: Complemental strand, 5439 - 5213
Alignment:
Q  81 ccttacttccttccaatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaa 180  Q
    |||| ||||||||||||||||  |||    |||||| |||||| | || | ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  5439 ccttccttccttccaatggcgtctgaccgccttccgccggacacactcgcagaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaa 5340  T
Q  181 cttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaaatacga 280  Q
    ||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||| | ||||| ||| |||||| || || | |    
T  5339 cttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccctcaatagatccttcatccttcgactcagatccaa 5240  T
Q  281 tatctaccaaatcgatgatgatttctc 307  Q
    ||||||||||||||| |||||||||||    
T  5239 tatctaccaaatcgaagatgatttctc 5213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 91 - 290
Target Start/End: Complemental strand, 37463492 - 37463293
Alignment:
Q  91 ttccaatggcgggtgatgttcttccgtcggacatagtcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatc 190  Q
    |||||||||||| ||| | ||||||| |||| ||| || | |||||| |||||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  37463492 ttccaatggcggatgacggtcttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatc 37463393  T
Q  191 acttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaaatacgatatctaccaa 290  Q
    |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||||||  ||| |||||||||||  ||| | |||||||||||||    
T  37463392 acttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatctaccaa 37463293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 39428812 - 39428717
Alignment:
Q  127 tcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcac 223  Q
    |||| |||||| |||||||| |||| ||  |||| || |||| |||||||||||||||||||| | |||||||  ||||| ||||||||||||||||    
T  39428812 tcaccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc-attcccacaacttcac 39428717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 127 - 290
Target Start/End: Complemental strand, 26575813 - 26575650
Alignment:
Q  127 tcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaa 226  Q
    |||| ||||||||||||||  |||| |||| |||||||||||||||||||||||||||||||||||||||||   ||||||||||| |||| |||| |||    
T  26575813 tcaccgaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaa 26575714  T
Q  227 ccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaaatacgatatctaccaa 290  Q
    ||||||||||| |||||||| |||||| ||||||||| |||||  ||||| |||||||||||||    
T  26575713 ccttcacctcagaaattcccccaatcgatccttaatccttcgattcaaattcgatatctaccaa 26575650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 562066 - 561980
Alignment:
Q  165 ctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaat 251  Q
    ||||||||||||| || ||||||||  |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaat 561980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 130 - 308
Target Start/End: Original strand, 41965940 - 41966118
Alignment:
Q  130 ctgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaacct 229  Q
    |||||||||||||||   |||| ||||||||| ||||||||||||||||||| || |||||||||  |||  ||||||||||||||||||||| ||||||    
T  41965940 ctgaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaacct 41966039  T
Q  230 tcacctcaaaaattccctcaatcgttccttaatcattcgacgcaaatacgatatctaccaaatcgatgatgatttctct 308  Q
    |||||||| ||| ||||||||||| ||||||||| |||||| |||    ||| |||||||  ||||||| |||||||||    
T  41966040 tcacctcagaaaatccctcaatcgatccttaatccttcgactcaacactgatctctaccagttcgatgaggatttctct 41966118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 293
Target Start/End: Original strand, 29467061 - 29467206
Alignment:
Q  148 taccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccct 247  Q
    |||| ||| |||| || ||||||||||| ||||| |||||||||||| ||||  ||||||||||||||||||||| ||| |||||||||  |||||||||    
T  29467061 taccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccct 29467160  T
Q  248 caatcgttccttaatcattcgacgcaaatacgatatctaccaaatc 293  Q
    |||||||| ||||||| |||||| ||| | |||| |||||||||||    
T  29467161 caatcgtttcttaatccttcgacacaactccgatttctaccaaatc 29467206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 148 - 270
Target Start/End: Original strand, 29452587 - 29452709
Alignment:
Q  148 taccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccct 247  Q
    |||| ||| |||| || ||||||||||| ||||| |||||||||||| ||||  |||||||||| |||||||||| ||| ||||||||| ||||||||||    
T  29452587 taccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccct 29452686  T
Q  248 caatcgttccttaatcattcgac 270  Q
    |||||||||||||||| ||||||    
T  29452687 caatcgttccttaatccttcgac 29452709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 293
Target Start/End: Complemental strand, 29424127 - 29423982
Alignment:
Q  148 taccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccct 247  Q
    |||| ||| |||| || ||||||||||| ||||| |||||||||||| ||||| ||||||||||||||| ||||| ||| ||||||||| | |||||| |    
T  29424127 taccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattcctt 29424028  T
Q  248 caatcgttccttaatcattcgacgcaaatacgatatctaccaaatc 293  Q
    |||||||||||||||| |||||| ||| |  ||| |||||||||||    
T  29424027 caatcgttccttaatccttcgacacaactctgatttctaccaaatc 29423982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 29442612 - 29442742
Alignment:
Q  165 ctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatca 264  Q
    ||||||||||| ||||| || ||||||||| ||||  ||||||||||||| ||||||| ||| ||||||||| |||||| |||||||||||||||||||     
T  29442612 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 29442711  T
Q  265 ttcgacgcaaatacgatatctaccaaatcga 295  Q
    |||||| ||| |  ||| |||||||||||||    
T  29442712 ttcgacacaactttgatttctaccaaatcga 29442742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 36225684 - 36225571
Alignment:
Q  127 tcactgaaatcttctcccgcataccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaa 226  Q
    |||| |||||| |||||||| ||| |||  |||| || |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||| ||    
T  36225684 tcaccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaa 36225585  T
Q  227 ccttcacctcaaaa 240  Q
     |||||||||||||    
T  36225584 tcttcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 45238842 - 45238749
Alignment:
Q  148 taccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaa 241  Q
    |||| ||| |||| || ||||||||||||||||||||||| ||||||   ||| ||||||||    |||||||||||| |||||| ||||||||    
T  45238842 taccggtagaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatagttacaacttcaccacccttcatctcaaaaa 45238749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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