View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_49 (Length: 311)
Name: NF9282_low_49
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 1147556 - 1147303
Alignment:
| Q |
12 |
agtttggtgtttgtttaggggaagctattcctataattttgctgtttggctattagtttcgtttctgtttgtgtagtttgttgcgttggtggtgtggtgt |
111 |
Q |
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| T |
1147556 |
agtttggtgtttgtttaggggaagctattccta--attttgctgtttggctattagttttgtttctgtttgtgtagtttgttgcgttggtggtgtggtgt |
1147459 |
T |
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| Q |
112 |
cgcttatatatggcatcttcaatcttgtttnnnnnnnnnnnnnnnnncttgatcttttcatcaagtgaaacatatacttatacttcaacctatattttat |
211 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1147458 |
cgcttatatacggcatcttcaatcttgtttaaaaaaaaaaaaaaaaacttgatcttttcatcaagtgaaacatatacttatacttcaacctatattttat |
1147359 |
T |
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| Q |
212 |
gaataaattgatcttttcatcaagtcaagagttcacatattgaagactaataatta |
267 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1147358 |
aaataatttgatcttttcatcaagtcaagagttcacatattgaagactaataatta |
1147303 |
T |
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