View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_5 (Length: 574)
Name: NF9282_low_5
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 31809779 - 31810337
Alignment:
| Q |
1 |
taaatagatataagtgagaattaatttgaagtttgatcatccatccatatttgagagtcaagtcaaaaagaacaaggaagaggtcagcgtgcaaacatgt |
100 |
Q |
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| T |
31809779 |
taaatagatataagtgagaattaatttgaagtttgatcatccat----atttgagagtcaagtcaaaaagaacgaggaagaggtcagcgtgcaaacatgt |
31809874 |
T |
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| Q |
101 |
tgaagaatgaagata-----cgaagacaccaacgtacgaacatgaccaacaatgatttaaagaaacacgcatatgggtcccactttagcattgaataatt |
195 |
Q |
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| T |
31809875 |
tgaagaatgaagatacgatacgaagacaccaacgtacgaacatgaccaacaatgatttaaagaaacacgcatatgggtcccactttagcattgaataatt |
31809974 |
T |
|
| Q |
196 |
gactgtgaccaagtatacaagtcaaagaagattgagtagaatttgagaaagagcaacgaagaaaagtcacactttcctctcttgttcttctttttctctc |
295 |
Q |
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| T |
31809975 |
gactgtgaccaagtatacaagtcaaagaagattgagtagaatttgagaaagagcaacgaagaaaagtcacactttcctctcttgttcttctttttctctc |
31810074 |
T |
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| Q |
296 |
ctaacactataataaatagaacttcacattcttcaattctcactcaccttcacaattatagcacacacaaaaagccactcatggaaaacaaattccaaaa |
395 |
Q |
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| T |
31810075 |
ctaacactataataaatagaacttcacattcttcaattctcactcaccttcacaattatagcacacacaagaagccactcatggaaaacaaattccaaaa |
31810174 |
T |
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| Q |
396 |
ctcaactttacttgaattatcagcaatagatgatattgaagctttcaaaagggaagtagaagaaaagggctatgatgtaaatgaggcagggttttggtac |
495 |
Q |
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| T |
31810175 |
ctcaactttacttgaattatcagcaatagatgatattgaagctttcaaaagggaagtagaagaaaagggctatgatgtaaatgaggcagggttttggtac |
31810274 |
T |
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| Q |
496 |
tgtagaaaaataggatcaaagaaaatgtgttatgaaaagaggacaccccttatgattgcttct |
558 |
Q |
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| T |
31810275 |
tgtagaaaaataggatcaaagaaaatgtgttatgaaaagagaacaccccttatgattgcttct |
31810337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 557
Target Start/End: Original strand, 35643107 - 35643240
Alignment:
| Q |
424 |
gatgatattgaagctttcaaaagggaagtagaagaaaagggctatgatgtaaatgaggcagggttttggtactgtagaaaaataggatcaaagaaaatgt |
523 |
Q |
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|||||| |||| |||||||| ||||||||||| || |||| | ||||| ||||||| ||| |||||||| |||||| ||| ||||| ||||| ||| |
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| T |
35643107 |
gatgattttgatgctttcaagagggaagtagatgagaaggatttggatgtgaatgaggaaggcttttggtatggtagaagaattggatcgaagaagatgg |
35643206 |
T |
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| Q |
524 |
gttatgaaaagaggacaccccttatgattgcttc |
557 |
Q |
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| T |
35643207 |
aatccgaaaagaggactcctcttatgattgcttc |
35643240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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