View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9282_low_55 (Length: 266)

Name: NF9282_low_55
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9282_low_55
NF9282_low_55
[»] chr2 (8 HSPs)
chr2 (19-263)||(2803204-2803448)
chr2 (179-253)||(33561499-33561573)
chr2 (179-251)||(30312825-30312897)
chr2 (154-256)||(13766795-13766899)
chr2 (179-252)||(29873586-29873659)
chr2 (210-251)||(36005930-36005971)
chr2 (179-263)||(2336660-2336744)
chr2 (210-254)||(31468797-31468841)
[»] chr5 (2 HSPs)
chr5 (149-263)||(10351209-10351325)
chr5 (179-251)||(36521946-36522018)
[»] chr6 (4 HSPs)
chr6 (179-256)||(8481962-8482039)
chr6 (179-246)||(5034876-5034943)
chr6 (179-220)||(27226675-27226716)
chr6 (179-251)||(6071168-6071240)
[»] chr4 (4 HSPs)
chr4 (154-232)||(42480533-42480611)
chr4 (210-256)||(22028412-22028458)
chr4 (179-251)||(34544142-34544215)
chr4 (187-263)||(23630348-23630424)
[»] chr1 (3 HSPs)
chr1 (179-251)||(1188638-1188710)
chr1 (210-256)||(32594761-32594807)
chr1 (179-252)||(1187413-1187486)
[»] chr8 (1 HSPs)
chr8 (179-256)||(4154326-4154402)
[»] chr7 (2 HSPs)
chr7 (214-263)||(7192786-7192835)
chr7 (210-251)||(21619095-21619136)
[»] chr3 (2 HSPs)
chr3 (179-220)||(260805-260846)
chr3 (154-231)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 2803448 - 2803204
Alignment:
Q  19 actcggttacttacaatagtgttgatattcatattggacatgtttttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaa 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803448 actcggttacttactatagtgttgatattcatattggacatgtttttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaa 2803349  T
Q  119 aaatgtgataccaacaccaacggcaacaattgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2803348 aaatgtgataccaacaccaacggcaacaattgtaggttaaaagtctcacattgtttaaagaagtggaggttgaacattctataaaagagatgacccataa 2803249  T
Q  219 actcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 263  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||    
T  2803248 acttaatgtcttaacgttttgggtaaaagtgtgatgtccaactca 2803204  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 33561573 - 33561499
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgat 253  Q
    ||||||||||| |||| | |||||  |||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  33561573 aagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggttttgggtaagagtgtgat 33561499  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 30312825 - 30312897
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 251  Q
    |||||||||||||||| | |||||   |||||||||||||||| | |  ||||| ||||||||||||||||||    
T  30312825 aagtggaggttgaacactttataacttagatgacccataaacttatttccttaaggttttgggtaaaagtgtg 30312897  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 13766795 - 13766899
Alignment:
Q  154 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaa--gagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 251  Q
    |||| |||||| ||||| |||| | |||||||||||||  ||| |||||||  ||||||||  |||||||||||| ||||| |||||| || ||| ||||    
T  13766795 gttagaagtctaacattgtttagaaaagtggaggttgattattttataaaagtgagatgactaataaactcaatgacttaaggttttgtgttaaaatgtg 13766894  T
Q  252 atgtc 256  Q
     ||||    
T  13766895 gtgtc 13766899  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 29873659 - 29873586
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 252  Q
    |||||||||||||||||| |||||  | || ||| |||||||||| || ||||| |||||| |||| |||||||    
T  29873659 aagtggaggttgaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtga 29873586  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 36005971 - 36005930
Alignment:
Q  210 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 251  Q
    |||||||||||||| || ||||| ||||||||||||||||||    
T  36005971 gacccataaactcattgccttaaggttttgggtaaaagtgtg 36005930  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 2336660 - 2336744
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 263  Q
    |||||||||||||||| | |||||  |||| |||||||||| |||||| |||||  |||||||| ||  |||| |||||| ||||    
T  2336660 aagtggaggttgaacactttataagtgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtccaactca 2336744  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 31468841 - 31468797
Alignment:
Q  210 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatg 254  Q
    |||||||||||||| || ||||| ||||||||||| |||||||||    
T  31468841 gacccataaactcattgccttaaggttttgggtaagagtgtgatg 31468797  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 10351325 - 10351209
Alignment:
Q  149 tgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa--cgttttgggtaaaa 246  Q
    |||| |||| ||||||||||||   |||| ||| |||||||||||||| ||||   || |||||||||||||||| ||||||||    ||||||||||||    
T  10351325 tgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttatacgtgaaatgacccataaactcattgtcttaaatatttttgggtaaaa 10351226  T
Q  247 gtgtgatgtccatctca 263  Q
    |||||||||| ||||||    
T  10351225 gtgtgatgtctatctca 10351209  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 36522018 - 36521946
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 251  Q
    |||| ||||||||||| ||| |||| |||| |||||||||||  | || ||||| ||||||||||| ||||||    
T  36522018 aagttgaggttgaacactctttaaatgagaggacccataaaccaattgccttaaggttttgggtaagagtgtg 36521946  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 8481962 - 8482039
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 256  Q
    |||||||||||||||| | |||||| |||||||| |||||||||| || |||||  |||||||||| |||||| ||||    
T  8481962 aagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagattttgggtaagagtgtggtgtc 8482039  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 5034943 - 5034876
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaa 246  Q
    ||||||||||||| || | |||||  |||||||||||| |||||||||| |||| ||||||| |||||    
T  5034943 aagtggaggttgaccactttataagtgagatgacccatcaactcaatgttttaaggttttggataaaa 5034876  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 27226716 - 27226675
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaac 220  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  27226716 aagtggaggttgatcattttataaatgagatgacccataaac 27226675  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 6071168 - 6071240
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 251  Q
    |||||||||||||||| | |||||  ||||||| ||||||||||| || |||||  |||||| ||| ||||||    
T  6071168 aagtggaggttgaacactttataagtgagatgatccataaactcattgccttaagattttggataagagtgtg 6071240  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 42480533 - 42480611
Alignment:
Q  154 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa 232  Q
    ||||||||||||| | ||||| || |||||||||||||||| | | |||  ||||||| |||||||||| |||||||||    
T  42480533 gttaaaagtctcatactatttgaaaaagtggaggttgaacaatatgtaagtgagatgatccataaactcgatgtcttaa 42480611  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 22028458 - 22028412
Alignment:
Q  210 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 256  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  22028458 gacccataaactcattgtcttaatgttttgggtaagagtgtggtgtc 22028412  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 34544142 - 34544215
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacg-ttttgggtaaaagtgtg 251  Q
    ||||||||||||| || | |||||| |||| |||||||||||||| || ||||| | |||||||||| ||||||    
T  34544142 aagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggtttttgggtaagagtgtg 34544215  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 23630348 - 23630424
Alignment:
Q  187 gttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 263  Q
    |||||||| | |||||  |||| ||| ||||||||||| |||||||   |||||||||||||||||| ||| |||||    
T  23630348 gttgaacactttataagtgagacgactcataaactcaacgtcttaagactttgggtaaaagtgtgatttccctctca 23630424  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 1188710 - 1188638
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 251  Q
    |||||||||||||| ||| |||||  |||| ||| |||||||||| ||  |||| ||||||||||||||||||    
T  1188710 aagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggttttgggtaaaagtgtg 1188638  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 32594807 - 32594761
Alignment:
Q  210 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 256  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  32594807 gacccataaactcattgtcttaaggttttgggtaagagtgtggtgtc 32594761  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 1187486 - 1187413
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 252  Q
    ||||||||||| |||||| |||||  |||| |||||||||||||| |  |||||  ||||| ||||||||||||    
T  1187486 aagtggaggttaaacattttataagtgagaagacccataaactcattaccttaagattttgagtaaaagtgtga 1187413  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 4154402 - 4154326
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 256  Q
    |||||||||||||||| | |||||  |||| |||||||||||||| || |||||  ||||||||||  ||||||||||    
T  4154402 aagtggaggttgaacactttataagtgaga-gacccataaactcattgccttaatattttgggtaagtgtgtgatgtc 4154326  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 7192786 - 7192835
Alignment:
Q  214 cataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccatctca 263  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||| ||||    
T  7192786 cataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactca 7192835  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 21619136 - 21619095
Alignment:
Q  210 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 251  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  21619136 gacccataaacccattgtcttaaggttttgggtaaaagtgtg 21619095  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 260846 - 260805
Alignment:
Q  179 aagtggaggttgaacattctataaaagagatgacccataaac 220  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  260846 aagtggaggttgatcattttataaatgagatgacccataaac 260805  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 32930698 - 32930775
Alignment:
Q  154 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtctta 231  Q
    |||| |||||| | ||| |||| | |||| || |||||||||| |||||  |||||||| ||||||||||||||||||    
T  32930698 gttagaagtcttatattgtttagaaaagtagaagttgaacattttataagtgagatgactcataaactcaatgtctta 32930775  T

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