View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_58 (Length: 257)
Name: NF9282_low_58
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_58 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 25691260 - 25691018
Alignment:
| Q |
15 |
cagaatagaaccctctggaccaccctacaccattaacaacctcattcttaccattcccatcactacccttaccatgatgtcccactcctctgctaacata |
114 |
Q |
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| T |
25691260 |
cagaatagaaccctctggaccaccctacaccattaacaacctcattcttaccattcccatcactacccttaccatgatgtcccactcctctgctaacata |
25691161 |
T |
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| Q |
115 |
agccgactgatcatccccactcctcctcctccagttgataaaaagtctctgactatcaacacgatgtcgttcaaacagaacgacatcgccagcatcaagt |
214 |
Q |
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| T |
25691160 |
agccgactgatcatccccactcctcctcctccagttgataaaaagtctctgactatcaacacgatgtcgttcaaacagaacgacatcgccagcatcgagt |
25691061 |
T |
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| Q |
215 |
cgtttctctttgacataacgactccaaccttttgttagaacat |
257 |
Q |
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| T |
25691060 |
cgtttatctttgacataacgactccaaccttttgttagaacat |
25691018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 42723784 - 42723854
Alignment:
| Q |
187 |
aaacagaacgacatcgccagcatcaagtcgtttctctttgacataacgactccaaccttttgttagaacat |
257 |
Q |
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| T |
42723784 |
aaacaaaacaacatcaccagcatcaagacgtttatctttaacataacgactccaaccttttgtaagaacat |
42723854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 8775015 - 8775064
Alignment:
| Q |
200 |
tcgccagcatcaagtcgtttctctttgacataacgactccaaccttttgt |
249 |
Q |
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| T |
8775015 |
tcgccagcatcaagttttttctctttaacaaaacggctccaaccttttgt |
8775064 |
T |
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