View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_60 (Length: 241)
Name: NF9282_low_60
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_60 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 40784963 - 40785185
Alignment:
| Q |
18 |
aacaagttggtttgcaagtagcatctcttatccaaattgggttaaattttgtgatattattatgatcaatttggtaaataaaatatatatggagaactat |
117 |
Q |
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| T |
40784963 |
aacaagttggtttgcaagtagcatctcttatccaaattgggttaaattttgtgatattattatgatcaatttggtaaataaaatatatatggagaactat |
40785062 |
T |
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| Q |
118 |
ttttatcaatcaacagcctagctatccacctgctcgtatcatatcaggtaggcactcacaaataattgacctcaagtattagcttgtttccttctacaat |
217 |
Q |
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| T |
40785063 |
ttttatgaatcaacagcctagctatccacctgctcatatcatatcaggtaggcactcacaaataattgacctcaagta-tagcttgtttccttctacaat |
40785161 |
T |
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| Q |
218 |
ccataattccacctgaatacaatc |
241 |
Q |
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| T |
40785162 |
ccataattccacctgaatacaatc |
40785185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 40792308 - 40792432
Alignment:
| Q |
18 |
aacaagttggtttgcaagtagcatctcttat--ccaaattgggttaaattttgtgatattattatg--atcaatttggtaaataaaatatatatggagaa |
113 |
Q |
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||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||| ||||||||||||| || ||||||||| |||| |
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| T |
40792308 |
aacaagttggtttgcaagtagcaattcttatatccaaatttagttaaattttgtgatatcattatatcatcaatttggtaa-tagtatatatatgtagaa |
40792406 |
T |
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| Q |
114 |
ctatttttatcaatcaacagcctagc |
139 |
Q |
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| T |
40792407 |
ctatttctaccaatcaacagcctagc |
40792432 |
T |
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