View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9282_low_65 (Length: 234)
Name: NF9282_low_65
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_65 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 32088054 - 32088174
Alignment:
| Q |
17 |
agacatcgatgtagattaacaatagtcaacatatcatactaaactcaatatcatgttgttatcgaccaaatgaccttaatttactgtaactttgccaagc |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32088054 |
agacatcaatgtagattaacaatagtcaacatatcatactaaactcaatatcatgttgttatcgaccaaatgaccttaatttactgtaactttgccaagc |
32088153 |
T |
|
| Q |
117 |
cggtaaacatacctcaggaat |
137 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32088154 |
cggtaaacatacctcaggaat |
32088174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University