View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9282_low_71 (Length: 215)
Name: NF9282_low_71
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9282_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 53688831 - 53689012
Alignment:
| Q |
14 |
ttggtgttgcataatgttcatagtacctgggtttcaatccggagggactacatctgaatctctgtgttgttaaaatatttttcataaaaaccagttggtg |
113 |
Q |
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| T |
53688831 |
ttggtgttgcataatgttcatagtacctgggtttcaatccggagggactacatctgaatct--gtgttgttaaaatatttttcataaaaaccagttggtg |
53688928 |
T |
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| Q |
114 |
tattttttggtcaagaaattctccgttcccaaaacaaaacgaaagaaaaatgggtgttcaatgggatgagttaccgcaagaaat |
197 |
Q |
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| T |
53688929 |
tattttttggtcaagaaattctccgttcccaaaacaaaacgaaagaaaaatgggtgttcaatgggatgagttaccgcaagaaat |
53689012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 53695924 - 53696074
Alignment:
| Q |
44 |
gtttcaatccggagggactacatctgaatctctgtgttgttaaaatatttttcataaaaaccagttggtgtattttttggtcaagaaattctccgttccc |
143 |
Q |
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| T |
53695924 |
gtttcatttcggagggagtacttctgaatctttgtgttgttaaaatatttttcataaaaaccagttg---tattttctggcaaggaaaagttccgttccc |
53696020 |
T |
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| Q |
144 |
aaaacaaaacgaaagaaaaatgggtgttcaatgggatgagttaccgcaagaaat |
197 |
Q |
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| T |
53696021 |
aaaacaaaaccaaagaaaaatgggtgttgaatgggctgagttaccgcaagaaat |
53696074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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