View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9282_low_9 (Length: 566)

Name: NF9282_low_9
Description: NF9282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9282_low_9
NF9282_low_9
[»] chr5 (10 HSPs)
chr5 (15-547)||(41547398-41547930)
chr5 (383-547)||(41547850-41548014)
chr5 (352-494)||(41547903-41548045)
chr5 (149-232)||(41519282-41519365)
chr5 (137-232)||(41509050-41509145)
chr5 (148-221)||(41503562-41503635)
chr5 (148-232)||(41499369-41499453)
chr5 (257-285)||(33080012-33080040)
chr5 (177-221)||(41469535-41469579)
chr5 (140-232)||(41503905-41503997)


Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 15 - 547
Target Start/End: Original strand, 41547398 - 41547930
Alignment:
Q  15 cagagacatttaagctcatcaatagtttggaatcatcctccagccttgaaactttttcatgcaagactctaaacttcgtgatccaagacgctagtaatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547398 cagagacatttaagctcatcaatagtttggaatcatcctccagccttgaaactttttcatgcaagactctaaacttcgtgatccaagacgctagtaatat 41547497  T
Q  115 gtcaacattgtgcttatcatttgctaatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccattt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547498 gtcaacattgtgcttatcatttgctaatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccattt 41547597  T
Q  215 ttaatctcaattccagcccacacaatacaatcttcctcccatttttccttcaactttgtcaactccaaaaccttattctccatctcaccagtcacttttc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547598 ttaatctcaattccagcccacacaatacaatcttcctcccatttttccttcaactttgtcaactccaaaaccttattctccatctcaccagtcacttttc 41547697  T
Q  315 tctgcacaccaagctcacagccatcctccgccgttttttccgtcaacctattaacctcagtcttcaagtcatcattcttttttcttagaacttcaaattt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547698 tctgcacaccaagctcacagccatcctccgccgttttttccgtcaacctattaacctcagtcttcaagtcatcattcttttttcttagaacttcaaattt 41547797  T
Q  415 gttcccatcctccaccctatcttccttcaacttattaacctcacactctagctcatcactcttctttcttaacacttcaaatttgttcccatactccacc 514  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547798 gttcccatcctccaccctatcttccttcaaattattaacctcacactctagctcatcactcttctttcttaacacttcaaatttgttcccatactccacc 41547897  T
Q  515 atatcttccttcaacctattaacctcacactcc 547  Q
    |||||||||||||||||||||||||||||||||    
T  41547898 atatcttccttcaacctattaacctcacactcc 41547930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 383 - 547
Target Start/End: Original strand, 41547850 - 41548014
Alignment:
Q  383 tcatcattcttttttcttagaacttcaaatttgttcccatcctccaccctatcttccttcaacttattaacctcacactctagctcatcactcttctttc 482  Q
    |||||| |||| |||||||  ||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| | ||||||| |||| ||||    
T  41547850 tcatcactcttctttcttaacacttcaaatttgttcccatactccaccatatcttccttcaacctattaacctcacactccaactcatcattcttttttc 41547949  T
Q  483 ttaacacttcaaatttgttcccatactccaccatatcttccttcaacctattaacctcacactcc 547  Q
    | ||||| |||||||||||||||| ||||||| | ||||| | |||  |||||||||||||||||    
T  41547950 tcaacacatcaaatttgttcccatcctccaccctttcttcttccaatttattaacctcacactcc 41548014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 352 - 494
Target Start/End: Original strand, 41547903 - 41548045
Alignment:
Q  352 ttccgtcaacctattaacctcagtcttcaagtcatcattcttttttcttagaacttcaaatttgttcccatcctccaccctatcttccttcaacttatta 451  Q
    |||| |||||||||||||||||  || ||| ||||||||||||||||| |  || |||||||||||||||||||||||||| ||||| | ||| ||||||    
T  41547903 ttccttcaacctattaacctcacactccaactcatcattcttttttctcaacacatcaaatttgttcccatcctccaccctttcttcttccaatttatta 41548002  T
Q  452 acctcacactctagctcatcactcttctttcttaacacttcaa 494  Q
    ||||||||||| | |||| || |||| | ||| ||||||||||    
T  41548003 acctcacactccaactcaccattcttttgtctcaacacttcaa 41548045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 41519282 - 41519365
Alignment:
Q  149 ttttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc 232  Q
    |||||||||||||  || |||||| ||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||    
T  41519282 ttttcgttcctcagctcgcttataattgccaaattcgtgttaactgtttccttcaattcgccatttttaatctcaattccagcc 41519365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 41509050 - 41509145
Alignment:
Q  137 gctaatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc 232  Q
    |||||||| || |||||||||||||  || |||||| ||||||||||| | || |||||||| |||||||||| |||||| || ||||||||||||    
T  41509050 gctaattttctgttttcgttcctcagctcgcttataattgccaaattcgtattcactgtttccttcaattcactattttttatttcaattccagcc 41509145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 41503562 - 41503635
Alignment:
Q  148 attttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatct 221  Q
    |||||| |||||||  || ||||||||| |||||||||| || | |||||| |||||||||||| |||||||||    
T  41503562 attttctttcctcagctcacttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatct 41503635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 41499369 - 41499453
Alignment:
Q  148 attttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc 232  Q
    |||||| |||||||  || ||||||||| |||||||||| || | |||||| |||||||||||| ||| ||||| || |||||||    
T  41499369 attttctttcctcagctcacttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagcc 41499453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 33080012 - 33080040
Alignment:
Q  257 ttttccttcaactttgtcaactccaaaac 285  Q
    |||||||||||||||||||||||||||||    
T  33080012 ttttccttcaactttgtcaactccaaaac 33080040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 41469535 - 41469579
Alignment:
Q  177 ccaaattcttgtttactgtttcattcaattcaccatttttaatct 221  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||    
T  41469535 ccaaattcttctttgctgtttccttcaattcatcatttttaatct 41469579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 41503905 - 41503997
Alignment:
Q  140 aatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc 232  Q
    |||||||| ||||| |||||||| || |||||||||||||||| |||  | || ||| | |||||||| | ||||||| ||| |||| |||||    
T  41503905 aatttgctgttttctttcctcaactcgcttatagttgccaaatacttcgtcacagttgccttcaattcgctatttttactcttaatttcagcc 41503997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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