View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9283_high_1 (Length: 556)
Name: NF9283_high_1
Description: NF9283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9283_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 38 - 462
Target Start/End: Original strand, 28064571 - 28064991
Alignment:
| Q |
38 |
ctagagttgcaaaagagaggatgggcatctcaagattcaatgactagttaacgatcattcacatatatacgttgtatcccaatattcaatatgagcaagc |
137 |
Q |
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| T |
28064571 |
ctagagttgcaaaagagaggatgggcatctcaagactcaatgactagttaacgatcattcacatatatacgttgtatcccaatactcaatatgagcaaga |
28064670 |
T |
|
| Q |
138 |
tattggagtgaaattannnnnnngtctttgtcattcattagttaatatgtttacaatttcacctaaacaggtttattatagattcaattgaaaataaaat |
237 |
Q |
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| T |
28064671 |
tattggagtgaaattatttttttgtctttgtcattcattagttaagatgtttacaatttcacctaaacaggtttattatagattcaattgaaaataaaat |
28064770 |
T |
|
| Q |
238 |
tgggtatttttggagattaatttcaactggtctgttttattttcaagtgggttaatgaggttctatggcatccttcatagttcatatgctggaggtttcc |
337 |
Q |
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| T |
28064771 |
tgggtatttttggagattaatttcaactggtctgttttattttcaagtgggttaatgaggttctatgacatccttcatagttcatatgctggaggtttgc |
28064870 |
T |
|
| Q |
338 |
ttccaatatattcttcattcttttccttttttacatgtaatgtttctttcaattgccaagaaattgtttaattttgctttctttgccattttcattctca |
437 |
Q |
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| T |
28064871 |
ttcca----attcttcattcttttcctttttcacatgtaatgtgtttttcaattgccaagaaattgtttaattttgctttctttgccattttcattctga |
28064966 |
T |
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| Q |
438 |
catttgaaaaaacttgtttaatatg |
462 |
Q |
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| T |
28064967 |
catttgaaaaaacttgtttaatatg |
28064991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 186 - 303
Target Start/End: Complemental strand, 43216529 - 43216412
Alignment:
| Q |
186 |
gtttacaatttcacctaaacaggtttattatagattcaattgaaaataaaattgggtatttttggagattaatttcaactg-gtctgttttattttcaag |
284 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || || ||||| ||||||||| |
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| T |
43216529 |
gtttacaatttcacttaaacatgtttattatagattcaattg-aaataaaattgggtatttttggagattcatttcaattgtgtatgtttgattttcaag |
43216431 |
T |
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| Q |
285 |
tgggttaatgaggttctat |
303 |
Q |
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| T |
43216430 |
tgggctcacgaggttctat |
43216412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 536
Target Start/End: Complemental strand, 18157559 - 18157493
Alignment:
| Q |
471 |
gaatcggcatatata-ttaaaggccacatacaagaagtgcaaagtgacaagctgatacaaccaaaaa |
536 |
Q |
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| T |
18157559 |
gaatcggcatatataattaaaggccacgcacaagaagtgcaaagtgactagctgatacaaccaaaaa |
18157493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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