View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9283_high_7 (Length: 250)
Name: NF9283_high_7
Description: NF9283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9283_high_7 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr6 (8 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 1801409 - 1801160
Alignment:
| Q |
1 |
aacatcagcaggtgtcatattaataacttccaacaaatcaccaatttcatcaaacaaatcatgtgactcaatatccaaataattcttaacaagaacctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1801409 |
aacatcagcaggtgtcatattaataacttccaacaaatcaccaatttcatcaaacaaataatgtgactcaatatccaaataattcttaacaagaacctta |
1801310 |
T |
|
| Q |
101 |
aaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctatcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1801309 |
aaagcttcaaaacaacaataagataactcaacgtgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaa |
1801210 |
T |
|
| Q |
201 |
ttataatcctctctcctccacacgcagaccaaattccatcaataaaattc |
250 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1801209 |
ttataatcctctcccctccacacgcggaccaaattccatcaataaaattc |
1801160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 250
Target Start/End: Complemental strand, 2829360 - 2829168
Alignment:
| Q |
58 |
atcatgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctatccta |
157 |
Q |
| |
|
|||||| ||||||| |||| |||| ||||| |||| ||||| ||||||| | | | ||||||||| | || | ||| |||||||||||||| ||||| |
|
|
| T |
2829360 |
atcatgagactcaacatcccaatagttctttgcaagcaccttgaaagcttgatagctacaataagacatttctatatgcttatccatccttcccctccta |
2829261 |
T |
|
| Q |
158 |
ataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattc |
250 |
Q |
| |
|
|| || || ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
2829260 |
attagggcaggatcaagtttgtccacaaaatttgttgtgaaaattatgatcctctctcctccacatgcagaccaaatcccatcaataaaattc |
2829168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 2842734 - 2842574
Alignment:
| Q |
90 |
caagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctatcctaataagagctggatcaagtttctccacaaaatt |
189 |
Q |
| |
|
|||||||||||||||||| | | | ||||||||| | || | ||| |||||||| |||||| |||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
2842734 |
caagaaccttaaaagcttgatagctacaataagacatttctatatgcttatccattcttcctctccttataagagcaggatcaagtttatccacaaaatt |
2842635 |
T |
|
| Q |
190 |
cgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattc |
250 |
Q |
| |
|
|| ||||||||||| ||||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
2842634 |
agttgtgaaaattatgatcctctctgatccacatgctgaccaaattccatcaataaaattc |
2842574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 250
Target Start/End: Complemental strand, 14578471 - 14578279
Alignment:
| Q |
58 |
atcatgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctatccta |
157 |
Q |
| |
|
|||||| ||||||| |||| |||||||||| |||| || || || |||||| | | |||||| || | |||| ||| ||||||||||||| ||||| |
|
|
| T |
14578471 |
atcatgagactcaacatcccaataattctttgcaagcactttgaatgcttcatagctacaatatgacatttcaatatgcatatccatccttcccctccta |
14578372 |
T |
|
| Q |
158 |
ataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattc |
250 |
Q |
| |
|
|||||||| |||||||||| |||||||| || || ||||||||||| ||||| ||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
14578371 |
ataagagcatgatcaagtttatccacaaagttggttgtgaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattc |
14578279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 2860120 - 2860310
Alignment:
| Q |
60 |
catgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctatcctaat |
159 |
Q |
| |
|
|||| ||||||| |||||| || |||||| |||||||||| || |||| | | | |||||| || | || | ||||||||||||||||| ||||||| |
|
|
| T |
2860120 |
catgagactcaacatccaagtagttcttagcaagaaccttgaacgcttgatagctacaataggacatttctatgtgtttatccatccttcccctcctaat |
2860219 |
T |
|
| Q |
160 |
aagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattc |
250 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
2860220 |
tagagcaggatcaagtttgtccacaaaattagttgtgaaaattatgatccgttctcctccacatgatgaccaaattccatcaatagaattc |
2860310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 2865505 - 2865695
Alignment:
| Q |
60 |
catgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctatcctaat |
159 |
Q |
| |
|
|||| ||||||| |||||| || |||||| |||||||||| || |||| | | | |||||| || | || | ||||||||||||||||| ||||||| |
|
|
| T |
2865505 |
catgagactcaacatccaagtagttcttagcaagaaccttgaatgcttgatatctacaataggacatttctatgtgtttatccatccttcccctcctaat |
2865604 |
T |
|
| Q |
160 |
aagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattc |
250 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
2865605 |
tagagcaggatcaagtttgtccacaaaattagttgtgaaaattatgatccgttctcctccacatgatgaccaaattccatcaatagaattc |
2865695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 2884695 - 2884885
Alignment:
| Q |
60 |
catgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctatcctaat |
159 |
Q |
| |
|
|||| ||||||| |||||| || |||||| |||||||||| || |||| | | | |||||| || | || | ||||||||||||||||| ||||||| |
|
|
| T |
2884695 |
catgagactcaacatccaagtagttcttagcaagaaccttgaacgcttgatatctacaataggacatttctatgtgtttatccatccttcccctcctaat |
2884794 |
T |
|
| Q |
160 |
aagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattc |
250 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
2884795 |
tagagcaggatcaagtttgtccacaaaattagttgtgaaaattatgatccgttctcctccacatgatgaccaaattccatcaatagaattc |
2884885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 2832886 - 2833046
Alignment:
| Q |
90 |
caagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctatcctaataagagctggatcaagtttctccacaaaatt |
189 |
Q |
| |
|
|||||||||| ||||||| | | | ||||||||| | || | ||| |||||||| ||||| |||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
2832886 |
caagaaccttgaaagcttgatagctacaataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttgtccacaaaatt |
2832985 |
T |
|
| Q |
190 |
cgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattc |
250 |
Q |
| |
|
|| ||||||||||| ||||||||| |||||| || ||||||||||||||||| |||||| |
|
|
| T |
2832986 |
tgttgtgaaaattattatcctctctgatccacatgctgaccaaattccatcaatgaaattc |
2833046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 2909641 - 2909752
Alignment:
| Q |
138 |
tatccatccttcctatcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattcc |
237 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||| ||||||||||| || ||| ||||||| ||||| ||||||||||| | ||||||||||| |
|
|
| T |
2909641 |
tatccatccttcccctccttataagagcaggatcaagtttgtccacaaaattagttgtg-aaattatgatcctttctcctccacatgttgaccaaattcc |
2909739 |
T |
|
| Q |
238 |
atcaataaaattc |
250 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2909740 |
atcaataaaattc |
2909752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University