View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9283_low_1 (Length: 766)
Name: NF9283_low_1
Description: NF9283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9283_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 205 - 463
Target Start/End: Complemental strand, 9733870 - 9733608
Alignment:
| Q |
205 |
cagcactgtgaagaactgcaacattattatgaaacaagagcagaaaaaagcaacaacgttggcaagttggtaacgtggattcgttcaggttcttttggga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9733870 |
cagcactgtgaagaactgcaacattattatgaaacaagagcagaaaaaagcaacaacgttggcaagttggtaacgtggattcgttcaggttcttttggga |
9733771 |
T |
|
| Q |
305 |
gaaacaatcaaagacaacgacatcacctaaaggaaggaagtgaaaaacaactcttcaaaaagttggttttggttttgcagcttcaacaagtgaaatcaaa |
404 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9733770 |
gaaacaatcaaagacaaagacatcacctaaaggaaggaagagaaaaacaactcttcaaaaagttggttttggttttgcagcttcaacaagtgaaatcaaa |
9733671 |
T |
|
| Q |
405 |
tgagttaaacaaaaaagtgatctttgatttt----cattgtcactcaccaacaaacccaagac |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9733670 |
tgagttaaacaaaaaagtgatctttgattttcattcattgtcactcaccaacaaacccaagac |
9733608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 536 - 675
Target Start/End: Complemental strand, 9733531 - 9733392
Alignment:
| Q |
536 |
catgaagttagtactaccttatttttatgtgtgtaactgaaaaaccaaaaacatgcatttaactctcatcatttctggttcatgttttctctctcatgag |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9733531 |
catgaagttagtactaccttatttttatgtgtgtaactgaaaaaccaaaaacatgcatttaactctcatcatttctggttcatgttttctctctcatgag |
9733432 |
T |
|
| Q |
636 |
ttattgatgggttaatctattagtggctactttcaaggag |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9733431 |
ttattgatgggttaatctattagtggctactttcaaggag |
9733392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 9734054 - 9733933
Alignment:
| Q |
19 |
gtaaattatttataactatttgttataaaataaaaatacagtaaccaataatgagttgaggagaataagttattgcactaggctaaggtgaatctataga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9734054 |
gtaaattatttataactatttgttataaaataaaaatacaataaccaataatgagttgaggagaataagttattgcactaggctaaggtgaatctataga |
9733955 |
T |
|
| Q |
119 |
gtaataggactagagtccctat |
140 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9733954 |
gtaataggactagagtccctat |
9733933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 9735614 - 9735529
Alignment:
| Q |
23 |
attatttataactatttgttataaaataaaaatacagtaaccaataatgagttgaggagaataagttattgcactaggctaaggtgaat |
111 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||| ||||| |||||| |
|
|
| T |
9735614 |
attatttgtaactatttcctataaaataaaaatacagtacccaataatgagtcgagaagaataa---attgcactaagctaaagtgaat |
9735529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University