View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9283_low_14 (Length: 341)
Name: NF9283_low_14
Description: NF9283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9283_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 5127489 - 5127348
Alignment:
| Q |
69 |
ataacttgttggttgatgtcaacaatttaatccgatatttgtacgcaagagtctcaacaaaaggaaagaggatgaagatgtgattgacacttgaaaacaa |
168 |
Q |
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| T |
5127489 |
ataacttgttggttgatgtcaacaatttaatccgatatttgtacgcaagagtctcaacaaaaggaaagaggatgaagatgtgattgacacttgaaaacaa |
5127390 |
T |
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| Q |
169 |
agttgaagttaaggagaacaagattgcagtatattgacatat |
210 |
Q |
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| T |
5127389 |
tgttgaagttaaggagaataagattgcagtatattgacatat |
5127348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 196 - 304
Target Start/End: Complemental strand, 5127331 - 5127223
Alignment:
| Q |
196 |
agtatattgacatatcttgtagatgtagacgagttgctgaaatcaacatttccaaaacctgccataatatgaatttcctcttctacacttgtatgaataa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5127331 |
agtatattgacatatcttgtagatgtagacgagttgctgaaatcaacatttccaaaacctgccataatatgaatttcctcttctacacttgtatgaataa |
5127232 |
T |
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| Q |
296 |
gacatgaag |
304 |
Q |
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|| |||||| |
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| T |
5127231 |
gatatgaag |
5127223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5128377 - 5128314
Alignment:
| Q |
1 |
acaaagtatagtaaaataatgtgtgtagcgtaaattagagtggttgattatagtgtgcgggaaa |
64 |
Q |
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| T |
5128377 |
acaaagtatagtaaaataatgtgtgtagcgtaaattagagtggttgattatagtgtgcgggaaa |
5128314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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