View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9283_low_16 (Length: 318)

Name: NF9283_low_16
Description: NF9283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9283_low_16
NF9283_low_16
[»] chr7 (14 HSPs)
chr7 (18-297)||(4631317-4631596)
chr7 (18-263)||(4667365-4667604)
chr7 (107-263)||(4783353-4783506)
chr7 (107-263)||(4815782-4815935)
chr7 (99-248)||(4653935-4654081)
chr7 (101-250)||(4711584-4711730)
chr7 (198-263)||(4644131-4644196)
chr7 (198-263)||(4673127-4673192)
chr7 (101-263)||(4696702-4696861)
chr7 (101-163)||(4637378-4637440)
chr7 (101-163)||(4864446-4864508)
chr7 (102-165)||(4644214-4644277)
chr7 (99-163)||(4673224-4673288)
chr7 (198-250)||(4845618-4845670)
[»] chr4 (1 HSPs)
chr4 (18-263)||(18925174-18925413)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 4631596 - 4631317
Alignment:
Q  18 ctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631596 ctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatatt 4631497  T
Q  118 gcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631496 gcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattga 4631397  T
Q  218 gattgtgtctatgccttcttttctctattacactaatctcagtgacacgaactaccattcaaagctacttggttctgaca 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||    
T  4631396 gattgtgtctatgccttcttttctctattacactaatctcagtgacacgaactaccatttaaagatacttgattttgaca 4631317  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 4667604 - 4667365
Alignment:
Q  18 ctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || || ||||||||| ||||||||| |||||||||||||||||||||||    
T  4667604 ctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatatt 4667505  T
Q  118 gcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattga 217  Q
    |||| || |     | |   ||||| ||| || ||||||||||||||||      |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4667504 gcatccataccaaacaaggggagaaactagacgtaactttcattcccaa------aaacacaaaccaattaaatgcttttgctttcatcaacggaattga 4667411  T
Q  218 gattgtgtctatgccttcttttctctattacactaatctcagtgac 263  Q
    ||||||||||||||| ||||||||||||||||| || |||||||||    
T  4667410 gattgtgtctatgccgtcttttctctattacacaaacctcagtgac 4667365  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 263
Target Start/End: Original strand, 4783353 - 4783506
Alignment:
Q  107 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatg---gtttagctttc 203  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| ||      |||||||||||| | |    |||  ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaa------cacaaaccaattgattcctagttatgctttc 4783446  T
Q  204 atcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac 263  Q
    || |||||||| ||  ||||||||||||||||||||||||||||||| || |||||||||    
T  4783447 attaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgac 4783506  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 263
Target Start/End: Original strand, 4815782 - 4815935
Alignment:
Q  107 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatg---gtttagctttc 203  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| ||      |||||||||||| | |    |||  ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaa------cacaaaccaattgagtcctagttatgctttc 4815875  T
Q  204 atcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac 263  Q
    || |||||||| ||  ||||||||||||||||||||||||||||||| || |||||||||    
T  4815876 attaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgac 4815935  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 248
Target Start/End: Complemental strand, 4654081 - 4653935
Alignment:
Q  99 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggt--tt 196  Q
    ||||||||||||||||||||||| ||| |    || ||| ||||||||||||||||||||||||||||       ||||||||||| | ||||  |  ||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaa------caacacaaaccattcaaatccttatt 4653988  T
Q  197 a-gctttcatcaacggaattgagattgtgtctatgccttcttttctctattac 248  Q
    | |||||||| || ||||||||  |||||||||||||||||||||||||||||    
T  4653987 atgctttcattaatggaattgaagttgtgtctatgccttcttttctctattac 4653935  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 250
Target Start/End: Original strand, 4711584 - 4711730
Alignment:
Q  101 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtt--ta- 197  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| ||||||||||||||| || ||      || ||| || | ||||  ||  ||     
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaa------cataaatcattcaaatccttattat 4711677  T
Q  198 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacac 250  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  4711678 gctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacac 4711730  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 4644196 - 4644131
Alignment:
Q  198 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac 263  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||||||||| || |||||||||    
T  4644196 gctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgac 4644131  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 4673192 - 4673127
Alignment:
Q  198 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac 263  Q
    |||||||| |||||||| || |||||||| ||||||||||||||||||||||| || |||||||||    
T  4673192 gctttcattaacggaatcgaaattgtgtcaatgccttcttttctctattacacaaacctcagtgac 4673127  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 263
Target Start/End: Original strand, 4696702 - 4696861
Alignment:
Q  101 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtt--ta- 197  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||  ||      || |||||| | ||||  ||  ||     
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaa------cataaaccagtcaaatccttattat 4696795  T
Q  198 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac 263  Q
    |||||||| |||||||| ||  ||||||| ||||||||||||||||||||||| || |||||||||    
T  4696796 gctttcattaacggaatagaagttgtgtcaatgccttcttttctctattacacaaacctcagtgac 4696861  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  101 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 163  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  101 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 163  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

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Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  102 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 165  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  99 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 163  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 4845618 - 4845670
Alignment:
Q  198 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacac 250  Q
    |||||| | |||||||| ||  ||||||| |||||||||||||||||||||||    
T  4845618 gctttcgttaacggaatcgaagttgtgtcgatgccttcttttctctattacac 4845670  T

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Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 18925174 - 18925413
Alignment:
Q  18 ctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatatt 117  Q
    |||||||| |||||||| ||||||||  | ||||||||||| |||||||| ||| | |||||||||  |||||||| |||||||||||| ||||| || |    
T  18925174 ctcttcaccgtcaaagttggaaccaatgtcacccttctcaatgactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtact 18925273  T
Q  118 gcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattga 217  Q
    || |  ||||    |||| ||||||| |||| ||||||||||||||   ||| ||   || ||| |||  ||| | ||  ||||||||||||||||||||    
T  18925274 gcctcaaaatgaaaccaactgagaagttaaatataactttcattcc---aaacac---cataaatcaaccaaaggcttatgctttcatcaacggaattga 18925367  T
Q  218 gattgtgtctatgccttcttttctctattacactaatctcagtgac 263  Q
    ||| ||||| ||||||||||||||||||||||| || |||| ||||    
T  18925368 gatcgtgtccatgccttcttttctctattacacaaacctcaatgac 18925413  T

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