View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9283_low_23 (Length: 229)
Name: NF9283_low_23
Description: NF9283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9283_low_23 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 14017182 - 14017397
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagataattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14017182 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagatgattgttggaaagatccaagtatttcaaatgtgaaagagactc |
14017281 |
T |
|
| Q |
101 |
caatttaataggaatttgtcctgcaagattgcaaactgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtataaaattgccttca |
200 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14017282 |
caattgaataggaatttgtcctccaagattgcaaattgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttca |
14017381 |
T |
|
| Q |
201 |
aaattatttctactga |
216 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
14017382 |
aaattaattctactga |
14017397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13943073 - 13943288
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagataattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13943073 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcaaaccatctagaagattgtaggaaagattcaagtatttcaaatgtgaaagagactc |
13943172 |
T |
|
| Q |
101 |
caatttaataggaatttgtcctgcaagattgcaaactgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtataaaattgccttca |
200 |
Q |
| |
|
||||| |||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13943173 |
caattgaataggaatttgtcctcgaaaataacaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttca |
13943272 |
T |
|
| Q |
201 |
aaattatttctactga |
216 |
Q |
| |
|
|||||||||||||||| |
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| T |
13943273 |
aaattatttctactga |
13943288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 14027170 - 14027385
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagataattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14027170 |
caagaaattgcaagttggagagacctccaagttgatgaggaatcaaaccatctagaagattgttggaaagattcaagtatttcaaatgtgaaagagactc |
14027269 |
T |
|
| Q |
101 |
caatttaataggaatttgtcctgcaagattgcaaactgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtataaaattgccttca |
200 |
Q |
| |
|
||||| |||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
14027270 |
caattgaataggaatttgtcctccaaaatgacaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctagtatagaattgccttca |
14027369 |
T |
|
| Q |
201 |
aaattatttctactga |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
14027370 |
aaattatttctactga |
14027385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13470894 - 13470685
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagataattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
13470894 |
caagaaattgcaagttggagagatctccaagtcgatgaggaataacaccatctagacggttgtttgaaagattcaagtatttcaaatgagaaagagactc |
13470795 |
T |
|
| Q |
101 |
caatttaataggaatttgtcctgcaagattgcaaactgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtataaaattgccttca |
200 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || | | ||| ||||||||||| |
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| T |
13470794 |
gaattgaataggaatttgtcctccaagattgcaacctgaaagatcaaggtatcttaggtttcttagagatccaaagatacttaggatataattgccttca |
13470695 |
T |
|
| Q |
201 |
aaattatttc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
13470694 |
aaattatttc |
13470685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 14112578 - 14112793
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagataattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| | |
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|
| T |
14112578 |
caagaaattgcaagttggagagatctccaagtcgattaggaatcacaccatctagacgattgttggaaagatttatgtatttcaaatgtgaaagagaccc |
14112677 |
T |
|
| Q |
101 |
caatttaataggaatttgtcctgcaagattgcaaactgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtataaaattgccttca |
200 |
Q |
| |
|
|||| |||||||||| |||| ||| || ||| |||||||||||||| |||||||||||||| |||||||||||||| ||| ||| ||||||||| |
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|
| T |
14112678 |
caatggaataggaattcgtccgccaaaataacaatttgaaagatcaaggtttcttaggtttcttagagatccaaagaaacttgggatatctttgccttca |
14112777 |
T |
|
| Q |
201 |
aaattatttctactga |
216 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
14112778 |
aaattatttccactga |
14112793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 14086694 - 14086910
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagataattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
14086694 |
caagaaattgcaagttggagagatctccaagttgatgaggaatcaaaccatctagataattccatgaaagattcaagtatttcaaatgcaaaagagactc |
14086793 |
T |
|
| Q |
101 |
caatttaataggaatttg---tcctgcaagattgcaaactgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtataaaattgcct |
197 |
Q |
| |
|
||||| |||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||| | |||||||||||||| ||| ||| ||||||| |
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|
| T |
14086794 |
caattgaataggaatttgatctccttcaaaattgcaatatgaaagatcaaggtatcttaggtttctcagagatccaaagaaacttgggatatgattgcct |
14086893 |
T |
|
| Q |
198 |
tcaaaattatttctact |
214 |
Q |
| |
|
| ||||| ||||||||| |
|
|
| T |
14086894 |
tgaaaatcatttctact |
14086910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 13860988 - 13860803
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagataattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
13860988 |
caagaaattgcaagttggagagatctccaagttgatgaggaatcaaaccatctagatgattccacgaaagattcaagtatttcaaatgcgaaagagactc |
13860889 |
T |
|
| Q |
101 |
caatttaataggaatttgtcctgcaagattgcaaactgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggta |
186 |
Q |
| |
|
|||| |||| ||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13860888 |
aaattgaatatgaatttgtcctccaaaatgacaattagaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggta |
13860803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 13890975 - 13890795
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagataattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||| |||||| |||| |||| ||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
13890975 |
caagaaattgcaagttggagagatttccaagt---tgaggaatcaaaccatccagatcattgccggaaattttcaagtatttcaaatggtaaagtgactc |
13890879 |
T |
|
| Q |
101 |
caatttaataggaatttgtcctgcaagattgcaaactgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctgg |
184 |
Q |
| |
|
|||| |||||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13890878 |
aaattgaataggaatttgtcctccaaaaccgcaataagaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctgg |
13890795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 13873096 - 13872929
Alignment:
| Q |
15 |
ttggagagatctccaagtcgatgaggaatcacaccatctagataattgttggaaagattcaagtatttcaaatgtgaaagagactccaatttaataggaa |
114 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||||| |||| ||| ||||||| |||| ||||||||||| | ||||||||| |||| ||| | || |
|
|
| T |
13873096 |
ttggagagatttccaagttgatgaggaatcaaaccatcgagatcattcgaggaaagactcaaatatttcaaatgcggaagagactcaaattgaattgaaa |
13872997 |
T |
|
| Q |
115 |
tttgtcctgcaagattgcaaactgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacct |
182 |
Q |
| |
|
||| ||| ||| ||| |||||| ||||||||||||| |||||||| ||| ||||| |||||| |
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|
| T |
13872996 |
tttttccaccaaagcgacaacgtgaaaggtcaaggtatcttatgtttcttagagaaccaaaaaaacct |
13872929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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