View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9283_low_26 (Length: 205)

Name: NF9283_low_26
Description: NF9283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9283_low_26
NF9283_low_26
[»] chr4 (2 HSPs)
chr4 (19-191)||(52187890-52188062)
chr4 (41-82)||(36590341-36590382)
[»] chr2 (4 HSPs)
chr2 (40-150)||(38990186-38990296)
chr2 (41-137)||(43862989-43863085)
chr2 (41-140)||(43866458-43866558)
chr2 (41-140)||(43874140-43874236)
[»] chr3 (2 HSPs)
chr3 (44-173)||(777079-777210)
chr3 (41-81)||(1187644-1187684)
[»] chr5 (1 HSPs)
chr5 (41-78)||(28092163-28092200)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 52187890 - 52188062
Alignment:
Q  19 tatagatgacgacatggttggatttttgattcaaaactcaccctcggcaaaagttgacatcatacgtttataaaggtgaaatgtacattcaacaacattt 118  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52187890 tatagatgacgacatggtgggatttttgattcaaaactcaccctcggcaaaagttgacatcataggtttataaaggtgaaatgtacattcaacaacattt 52187989  T
Q  119 taaagatagattgattgatttagtaattttacttttgcatccttttttgtttctacttcccacgatgtctctg 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187990 taaagatagattgattgatttagtaattttacttttgcatccttttttgtttctacttcccacgatgtctctg 52188062  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 36590382 - 36590341
Alignment:
Q  41 tttttgattcaaaactcaccctcggcaaaagttgacatcata 82  Q
    |||||||||||||||||||| || ||| ||||||||||||||    
T  36590382 tttttgattcaaaactcaccgtcagcagaagttgacatcata 36590341  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 38990186 - 38990296
Alignment:
Q  40 atttttgattcaaaactcaccctcggcaaaagttgacatcatacgtttataaaggtgaaatgtacattcaacaacattttaaagatagattgattgattt 139  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||  |||||||| ||||||||||||| |||| |||||||||||    
T  38990186 atttttgattcaaaactcaccctcggcaaaggttgacatcatacgtttgtaaaggtaaaccgtacattcgacaacattttaaaaataggttgattgattt 38990285  T
Q  140 agtaattttac 150  Q
    | |||||||||    
T  38990286 aataattttac 38990296  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 43863085 - 43862989
Alignment:
Q  41 tttttgattcaaaactcaccctcggcaaaagttgacatcatacgtttataaaggtgaaatgtacattcaacaacattttaaagatagattgattgat 137  Q
    |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||| ||| |||| |||||    
T  43863085 tttttgattcaaaactcaccctcgacaaaggttgacatcgtacgtttataaaggtgaaatgtgcattcaacgacattttaaatataaattgtttgat 43862989  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 43866558 - 43866458
Alignment:
Q  41 tttttgattcaaaactcaccctcggcaaaagttgacatcatacgtttataaaggtg-aaatgtacattcaacaacattttaaagatagattgattgattt 139  Q
    |||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |||||||| ||| |||    
T  43866558 tttttgattcaaaactcaccctcgacaaaggttgacatcatacatttataaaggtgaaaatgtgcattcaacaacattttaaaaatagattgtttgcttt 43866459  T
Q  140 a 140  Q
    |    
T  43866458 a 43866458  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 43874236 - 43874140
Alignment:
Q  41 tttttgattcaaaactcaccctcggcaaaagttgacatcatacgtttataaaggtgaaatgtacattcaacaacattttaaagatagattgattgattta 140  Q
    |||||||||||||||||||||| | |||| ||||||||| |||||||||||||||||||||| ||||   |||||||||||| |||||||| ||||||||    
T  43874236 tttttgattcaaaactcacccttgacaaaggttgacatcctacgtttataaaggtgaaatgtgcatt---caacattttaaaaatagattgtttgattta 43874140  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 777210 - 777079
Alignment:
Q  44 ttgattcaaaactcaccctcggcaaaagttgacatcatac--gtttata-aaggtgaaatgtacattcaacaacattttaaagatagattgattgattta 140  Q
    ||||||||||||||||| |||||||| ||||| ||| |||  | |  || ||||||||| || ||||||||||| |||||||||||||||| ||| ||||    
T  777210 ttgattcaaaactcaccatcggcaaaggttgatatcttacaagatattataaggtgaaaggtgcattcaacaac-ttttaaagatagattgtttggttta 777112  T
Q  141 gtaattttacttttgcatccttttttgtttcta 173  Q
    ||||| ||| |||||||||||| | ||||||||    
T  777111 gtaatgttatttttgcatccttctctgtttcta 777079  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 1187644 - 1187684
Alignment:
Q  41 tttttgattcaaaactcaccctcggcaaaagttgacatcat 81  Q
    |||||| |||||||||||||||||||||| ||| |||||||    
T  1187644 tttttgcttcaaaactcaccctcggcaaaggttcacatcat 1187684  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 28092163 - 28092200
Alignment:
Q  41 tttttgattcaaaactcaccctcggcaaaagttgacat 78  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  28092163 tttttgattcaaaactcaccctcggcaaaggttgacat 28092200  T

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