View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9283_low_5 (Length: 428)
Name: NF9283_low_5
Description: NF9283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9283_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 34986202 - 34986595
Alignment:
| Q |
19 |
cagagacgttcgtgagattgtagaaaaactctcgtcggataaagtcaaagctcgcgaagtaagcttcaatttctttcataactcacttttcgcattcctt |
118 |
Q |
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| T |
34986202 |
cagagacgttcgtgagattgtagaaaaactctcgtcggataaagtcaaagctcgcgaagtaagcttcaatttctttcataactcacttttcgcattcctt |
34986301 |
T |
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| Q |
119 |
taatcaatcactgcgaaaagattttcactgttcgttttaatttcatgcatattgcgttcaatttagtttcgaaattcgtttttctgttctatcagttatc |
218 |
Q |
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| T |
34986302 |
taatcaatcactgcgaaaagattttcactgttcgttttaatttcatgcatattgcgttcaatttagtttcgaaattcgtttttctgttctatcagttatc |
34986401 |
T |
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| Q |
219 |
aatttgaatgattatcaccgttttgatttggacgaagtaattgttaatctgttactttaattttaatcggattattataatagaatcgtttaattaacca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34986402 |
aatttgaatgattatcaccgttttgatttggacgaagtaattgttaatctgttactttaattttaatcggattattataatggaatcgtttaattaacca |
34986501 |
T |
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| Q |
319 |
gtgatgatttgttttcgctttcatgtttctaccactagagtaattgcaacattctgaacgaaaatgaatcttaataagctacatacgttgaatg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986502 |
gtgatgatttgttttcgctttcatgtttctaccactagagtaattgcaacattctgaacgaaaatgaatcttaataagctacatacgttgaatg |
34986595 |
T |
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