View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9283_low_7 (Length: 403)
Name: NF9283_low_7
Description: NF9283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9283_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 4831676 - 4832063
Alignment:
| Q |
1 |
tcattgagtacttagtaatatcctatcaaactttaaaaacttgttagagtaatattgtatcgataagattgaagattagacactagacatatgtgaatat |
100 |
Q |
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| T |
4831676 |
tcatggagtacttagtaatatcctatcaaactttaaaaacttgttagagtaatattgtatcgataagattgaagattagacactagacatatgtgaatat |
4831775 |
T |
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| Q |
101 |
aaacaaagttagtgcaagcctttcttttttcatgtaggaataacaccatttt-ttctcggtaaaataactaaggcagtgcaaagaaacacaaatgctcat |
199 |
Q |
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| T |
4831776 |
aaacaaagttagtgcaggcctttcttttttcatgtaggaataacaccatttttttctcggtaaaataactaaggcagtgcaaagaaacacaaatgctcat |
4831875 |
T |
|
| Q |
200 |
agtgtctctcctactttccaataatttacattaatatataacaactactatgggaaattacaaagtataatacaattgaatcaagcattaagccttaaat |
299 |
Q |
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| T |
4831876 |
agtgtctctcctactttcctataatttacattaatatataacaactactatgggaaattacaaagtataatacaattgaatcaagcattaagcctcaaat |
4831975 |
T |
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| Q |
300 |
tttgacttnnnnnnntaaagtgatgtttcaagccacatatcattaagccatggatcaaatggcataccaatcgaataaacaatgaaac |
387 |
Q |
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| T |
4831976 |
tttgacttaaaaaaataaagtgatgttttaagccacatatcattaagccatggatcaagtggcataccaatcgaataaacaatgaaac |
4832063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 4840954 - 4841060
Alignment:
| Q |
243 |
actactatgggaaattacaaagtataatacaattgaatcaagcattaagccttaaattttgact-tnnnnnnntaaagtgatgtttcaagccacatatca |
341 |
Q |
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| T |
4840954 |
actactatgggaaattgcaaagtataatacaattgaatcaagcattaagcctcaaattttgactaaaaataaataaagtgatgttttaagccacatatca |
4841053 |
T |
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| Q |
342 |
ttaagcc |
348 |
Q |
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||||||| |
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| T |
4841054 |
ttaagcc |
4841060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 4840890 - 4840955
Alignment:
| Q |
161 |
aaaataactaaggcagtgcaaagaaacacaaatgctcatagtgtctctcctactttccaataatttac |
228 |
Q |
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| T |
4840890 |
aaaataactaaggcagtgcaaagaaacacaaa--aacacagtgcctctcctactttcccataatttac |
4840955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 4805902 - 4805940
Alignment:
| Q |
269 |
atacaattgaatcaagcattaagccttaaattttgactt |
307 |
Q |
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| T |
4805902 |
atacaattgaatcaagcatgaagcctcaaattttgactt |
4805940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 4834092 - 4834126
Alignment:
| Q |
102 |
aacaaagttagtgcaagcctttcttttttcatgta |
136 |
Q |
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| T |
4834092 |
aacaaagttagtgcaggcctttcttttttcatgta |
4834126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 4840848 - 4840886
Alignment:
| Q |
41 |
ttgttagagtaatattgtatcgataagattgaagattag |
79 |
Q |
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| T |
4840848 |
ttgttagagtaatattttatcaataagattgaagattag |
4840886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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