View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9283_low_8 (Length: 360)
Name: NF9283_low_8
Description: NF9283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9283_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 35057512 - 35057751
Alignment:
| Q |
17 |
aagaaacgcgtgttctgacgccgtttcacaggcgcggcttcgatcctttcttgtttatgcagaagctgtttccaaacttcgcggtggagattcgaatgtg |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35057512 |
aagaaacgcatgttctgacgccgtttcacaggcgcggcttcgatcctttcttgtttatgcagaagctgtttccaaacttcgcggtggagattcgaatgtg |
35057611 |
T |
|
| Q |
117 |
aaatatgcttggtatgggagttctggtgagaatgacgttagaggcattctatcaaacgggttcagtcatgtccatgggaatagcatctgcctctctccag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35057612 |
aaatatgcttggtatgggagttctggtgagaatgacgttagaggcattctatcaaacgggttcagtcatgtccatgggaatagcatctgcctctctccag |
35057711 |
T |
|
| Q |
217 |
atgattctcctctccaaaggttagttctttattctccaat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
35057712 |
atgattctcctctccaaaggttagttctttaatatccaat |
35057751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 35057827 - 35057869
Alignment:
| Q |
310 |
ttgtatttgtatttaggttagtttgagtagcataagtaattat |
352 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35057827 |
ttgtatttgaatttaggttagtttgagtagcataagtaattat |
35057869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 35057787 - 35057828
Alignment:
| Q |
282 |
aatgttaattattattagtcaattgaacttgtatttgtattt |
323 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
35057787 |
aatgttaactattattagtcaattgaagttgtatttgtattt |
35057828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University